Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.61■□□□□ 0.41
SEMA3DO95025 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 AC112497.1-201ENST00000624824 639 ntBASIC17.61■□□□□ 0.41
SEMA3DO95025 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 AL163051.1-201ENST00000569214 1512 ntBASIC17.61■□□□□ 0.41
SEMA3DO95025 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.61■□□□□ 0.41
SEMA3DO95025 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.61■□□□□ 0.41
SEMA3DO95025 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.61■□□□□ 0.41
SEMA3DO95025 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SEMA3DO95025 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 MIR149-201ENST00000384879 89 ntBASIC17.6■□□□□ 0.41
SEMA3DO95025 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.6■□□□□ 0.41
SEMA3DO95025 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.6■□□□□ 0.41
SEMA3DO95025 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.6■□□□□ 0.41
SEMA3DO95025 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SEMA3DO95025 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SEMA3DO95025 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
SEMA3DO95025 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SEMA3DO95025 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.59■□□□□ 0.41
SEMA3DO95025 ABALON-201ENST00000629058 1903 ntBASIC17.59■□□□□ 0.41
SEMA3DO95025 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SEMA3DO95025 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SEMA3DO95025 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 AC009102.3-201ENST00000623118 1491 ntBASIC17.59■□□□□ 0.41
SEMA3DO95025 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.59■□□□□ 0.41
SEMA3DO95025 LINC01568-207ENST00000641790 1380 ntBASIC17.59■□□□□ 0.41
SEMA3DO95025 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 AC104390.1-201ENST00000555663 520 ntBASIC17.59■□□□□ 0.41
SEMA3DO95025 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.59■□□□□ 0.41
SEMA3DO95025 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.59■□□□□ 0.41
SEMA3DO95025 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.59■□□□□ 0.41
SEMA3DO95025 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.59■□□□□ 0.41
SEMA3DO95025 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SEMA3DO95025 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SEMA3DO95025 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SEMA3DO95025 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SEMA3DO95025 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SEMA3DO95025 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SEMA3DO95025 AL390961.4-201ENST00000623958 2535 ntBASIC17.58■□□□□ 0.41
SEMA3DO95025 PCDHB18P-201ENST00000524813 2368 ntBASIC17.58■□□□□ 0.41
SEMA3DO95025 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.58■□□□□ 0.41
SEMA3DO95025 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SEMA3DO95025 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 KRT18P22-201ENST00000402024 1347 ntBASIC17.58■□□□□ 0.4
SEMA3DO95025 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.58■□□□□ 0.4
SEMA3DO95025 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SEMA3DO95025 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.58■□□□□ 0.4
SEMA3DO95025 ECEL1P2-202ENST00000465689 757 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms