Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 AC034236.2-201ENST00000606662 1610 ntBASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLIP2Q9UDT6 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 AC104581.1-202ENST00000635932 2618 ntBASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 HEIH-201ENST00000623091 1652 ntBASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 AL357033.4-201ENST00000617703 1807 ntBASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.8■■□□□ 1.08
CLIP2Q9UDT6 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 AC010240.3-201ENST00000607688 395 ntBASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.79■■□□□ 1.08
CLIP2Q9UDT6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 AC005332.8-201ENST00000622750 2735 ntBASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLIP2Q9UDT6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms