Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 PRORSD1P-201ENST00000295112 541 ntBASIC16.87■□□□□ 0.29
DDX28Q9NUL7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 NBPF21P-201ENST00000425093 1451 ntBASIC16.86■□□□□ 0.29
DDX28Q9NUL7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 KRT17P3-201ENST00000420566 1262 ntBASIC16.86■□□□□ 0.29
DDX28Q9NUL7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 MTDHP1-201ENST00000605323 784 ntBASIC16.86■□□□□ 0.29
DDX28Q9NUL7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
DDX28Q9NUL7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms