Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL21A1Q96P44 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL21A1Q96P44 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TSPY14P-201ENST00000303979 915 ntBASIC17.41■□□□□ 0.38
COL21A1Q96P44 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TSPY17P-201ENST00000450329 467 ntBASIC17.41■□□□□ 0.38
COL21A1Q96P44 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 EGLN1P1-201ENST00000531623 762 ntBASIC17.41■□□□□ 0.38
COL21A1Q96P44 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 AC010947.1-201ENST00000623454 693 ntBASIC17.41■□□□□ 0.38
COL21A1Q96P44 AC116562.4-202ENST00000641738 218 ntBASIC17.41■□□□□ 0.38
COL21A1Q96P44 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL21A1Q96P44 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.41■□□□□ 0.38
COL21A1Q96P44 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL21A1Q96P44 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL21A1Q96P44 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms