Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AL671277.2-201ENST00000458060 996 ntBASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 AL138781.2-201ENST00000617896 1843 ntBASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 AC009065.1-201ENST00000564055 1225 ntBASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 MIR3180-4-201ENST00000582223 153 ntBASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 AL031598.1-201ENST00000561511 1773 ntBASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD1Q96NR3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 AL031133.1-201ENST00000406807 723 ntBASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD1Q96NR3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 MYLKP1-201ENST00000509077 1580 ntBASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
PTCHD1Q96NR3 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 LINC01311-201ENST00000565162 1445 ntBASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms