Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 MIR149-201ENST00000384879 89 ntBASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 SDHAP2-201ENST00000455183 2001 ntBASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 GMCL1P1-201ENST00000463439 1581 ntBASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 COX11P1-201ENST00000489116 835 ntBASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 MIR3917-201ENST00000580971 93 ntBASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.77■□□□□ 0.59
SHROOM3Q8TF72 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AL450487.1-201ENST00000426799 995 ntBASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AC093677.2-201ENST00000600169 1863 ntBASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 AL163051.1-201ENST00000569214 1512 ntBASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.76■□□□□ 0.59
SHROOM3Q8TF72 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 AP000550.4-202ENST00000639755 178 ntBASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 GCSHP2-201ENST00000560971 527 ntBASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 MYC-208ENST00000641036 567 ntBASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHROOM3Q8TF72 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AL390961.4-201ENST00000623958 2535 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC063952.2-201ENST00000498792 1227 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC009065.1-201ENST00000564055 1225 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC006011.2-201ENST00000621313 1158 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 AC112777.1-201ENST00000540175 1423 ntBASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms