Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 MIR149-201ENST00000384879 89 ntBASIC17.92■□□□□ 0.46
LMX1AQ8TE12 FDX1P1-201ENST00000449115 551 ntBASIC17.92■□□□□ 0.46
LMX1AQ8TE12 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 AC011840.4-201ENST00000578471 627 ntBASIC17.92■□□□□ 0.46
LMX1AQ8TE12 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 HCG11-201ENST00000411553 5696 ntBASIC17.91■□□□□ 0.46
LMX1AQ8TE12 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LMX1AQ8TE12 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 AC009102.3-201ENST00000623118 1491 ntBASIC17.9■□□□□ 0.46
LMX1AQ8TE12 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 NSUN5P1-202ENST00000421140 1535 ntBASIC17.9■□□□□ 0.46
LMX1AQ8TE12 NSUN5P2-203ENST00000457352 1529 ntBASIC17.9■□□□□ 0.46
LMX1AQ8TE12 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 IGHV3-47-201ENST00000425060 335 ntBASIC17.9■□□□□ 0.46
LMX1AQ8TE12 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 AL031008.1-201ENST00000619963 541 ntBASIC17.9■□□□□ 0.46
LMX1AQ8TE12 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LMX1AQ8TE12 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.89■□□□□ 0.46
LMX1AQ8TE12 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LMX1AQ8TE12 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.46
LMX1AQ8TE12 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LMX1AQ8TE12 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LMX1AQ8TE12 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.89■□□□□ 0.45
LMX1AQ8TE12 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 MINOS1P3-201ENST00000457048 203 ntBASIC17.89■□□□□ 0.45
LMX1AQ8TE12 AC091607.1-201ENST00000490318 1060 ntBASIC17.89■□□□□ 0.45
LMX1AQ8TE12 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms