Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC89Q8N998 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 ESPNP-201ENST00000270691 2015 ntBASIC19.13■□□□□ 0.65
CCDC89Q8N998 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC89Q8N998 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC89Q8N998 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC89Q8N998 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCDC89Q8N998 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 AC138028.4-201ENST00000564984 1845 ntBASIC19.12■□□□□ 0.65
CCDC89Q8N998 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 AL109659.2-201ENST00000606809 1674 ntBASIC19.12■□□□□ 0.65
CCDC89Q8N998 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 FAM197Y1-201ENST00000421178 764 ntBASIC19.12■□□□□ 0.65
CCDC89Q8N998 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 KRT18P41-201ENST00000518924 1277 ntBASIC19.12■□□□□ 0.65
CCDC89Q8N998 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 AP000692.2-201ENST00000608391 879 ntBASIC19.12■□□□□ 0.65
CCDC89Q8N998 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC89Q8N998 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC89Q8N998 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC89Q8N998 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC89Q8N998 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 KRT18P29-201ENST00000397031 1267 ntBASIC19.1■□□□□ 0.65
CCDC89Q8N998 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.1■□□□□ 0.65
CCDC89Q8N998 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 CD177P1-201ENST00000606252 935 ntBASIC19.1■□□□□ 0.65
CCDC89Q8N998 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC89Q8N998 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC89Q8N998 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms