Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.41■□□□□ 0.38
RUNDC3AQ59EK9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 AL023284.2-201ENST00000405850 579 ntBASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 B3GAT3P1-201ENST00000471720 806 ntBASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 MIR6786-201ENST00000616843 113 ntBASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 AC073648.6-201ENST00000641589 218 ntBASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 PHGDH-209ENST00000641074 1780 ntBASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.4■□□□□ 0.38
RUNDC3AQ59EK9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
RUNDC3AQ59EK9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RUNDC3AQ59EK9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
RUNDC3AQ59EK9 KRT8P50-201ENST00000562022 1438 ntBASIC17.39■□□□□ 0.38
RUNDC3AQ59EK9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 KRT18P6-201ENST00000555540 1265 ntBASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RUNDC3AQ59EK9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.38■□□□□ 0.37
RUNDC3AQ59EK9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms