Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 KRT8P50-201ENST00000562022 1438 ntBASIC18■□□□□ 0.47
PTCHD3Q3KNS1 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 AC063952.2-201ENST00000498792 1227 ntBASIC18■□□□□ 0.47
PTCHD3Q3KNS1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTCHD3Q3KNS1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AP000593.1-201ENST00000393668 712 ntBASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 RNF152P1-201ENST00000397754 604 ntBASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AL512604.3-201ENST00000569583 964 ntBASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AL023973.1-201ENST00000624619 620 ntBASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD3Q3KNS1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 AC011558.1-201ENST00000623459 338 ntBASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms