Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
RFX4Q33E94 AC008556.1-201ENST00000610908 2040 ntBASIC17.14■□□□□ 0.34
RFX4Q33E94 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
RFX4Q33E94 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
RFX4Q33E94 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.14■□□□□ 0.33
RFX4Q33E94 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.14■□□□□ 0.33
RFX4Q33E94 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX4Q33E94 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.14■□□□□ 0.33
RFX4Q33E94 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.14■□□□□ 0.33
RFX4Q33E94 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.14■□□□□ 0.33
RFX4Q33E94 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX4Q33E94 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RFX4Q33E94 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RFX4Q33E94 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RFX4Q33E94 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX4Q33E94 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
RFX4Q33E94 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RFX4Q33E94 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 KRT8P32-201ENST00000512863 1461 ntBASIC17.13■□□□□ 0.33
RFX4Q33E94 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.13■□□□□ 0.33
RFX4Q33E94 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.13■□□□□ 0.33
RFX4Q33E94 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.13■□□□□ 0.33
RFX4Q33E94 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 AC008403.3-201ENST00000598924 454 ntBASIC17.13■□□□□ 0.33
RFX4Q33E94 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RFX4Q33E94 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
RFX4Q33E94 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX4Q33E94 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
RFX4Q33E94 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX4Q33E94 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
RFX4Q33E94 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RFX4Q33E94 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX4Q33E94 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
RFX4Q33E94 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX4Q33E94 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX4Q33E94 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX4Q33E94 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX4Q33E94 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX4Q33E94 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX4Q33E94 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX4Q33E94 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX4Q33E94 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms