Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 FAM197Y4-202ENST00000622692 608 ntBASIC17.19■□□□□ 0.34
CDH12P55289 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CDH12P55289 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 KRT8P45-201ENST00000414328 1447 ntBASIC17.19■□□□□ 0.34
CDH12P55289 KRT8P3-201ENST00000519669 1449 ntBASIC17.19■□□□□ 0.34
CDH12P55289 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH12P55289 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH12P55289 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH12P55289 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CDH12P55289 AC134043.2-201ENST00000624206 2238 ntBASIC17.19■□□□□ 0.34
CDH12P55289 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH12P55289 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.18■□□□□ 0.34
CDH12P55289 AC093677.2-201ENST00000600169 1863 ntBASIC17.18■□□□□ 0.34
CDH12P55289 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDH12P55289 TSPY20P-201ENST00000450910 630 ntBASIC17.18■□□□□ 0.34
CDH12P55289 AC008040.2-201ENST00000461049 708 ntBASIC17.18■□□□□ 0.34
CDH12P55289 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 AC026271.3-201ENST00000571884 352 ntBASIC17.18■□□□□ 0.34
CDH12P55289 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.18■□□□□ 0.34
CDH12P55289 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 ITM2C-210ENST00000620962 501 ntBASIC17.18■□□□□ 0.34
CDH12P55289 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
CDH12P55289 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH12P55289 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH12P55289 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
CDH12P55289 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH12P55289 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDH12P55289 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
CDH12P55289 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 KRT18P29-201ENST00000397031 1267 ntBASIC17.17■□□□□ 0.34
CDH12P55289 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CDH12P55289 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.17■□□□□ 0.34
CDH12P55289 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.17■□□□□ 0.34
CDH12P55289 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 AC130371.2-201ENST00000619443 611 ntBASIC17.17■□□□□ 0.34
CDH12P55289 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH12P55289 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH12P55289 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH12P55289 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 GNAS-203ENST00000306120 1878 ntBASIC17.16■□□□□ 0.34
CDH12P55289 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms