Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
HDAC3O15379 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HDAC3O15379 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.95■□□□□ 0.46
HDAC3O15379 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC3O15379 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC3O15379 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC3O15379 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC3O15379 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HDAC3O15379 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.95■□□□□ 0.46
HDAC3O15379 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.95■□□□□ 0.46
HDAC3O15379 CKBP1-201ENST00000565489 1086 ntBASIC17.95■□□□□ 0.46
HDAC3O15379 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HDAC3O15379 AC233263.1-201ENST00000578059 224 ntBASIC17.95■□□□□ 0.46
HDAC3O15379 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.95■□□□□ 0.46
HDAC3O15379 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC3O15379 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
HDAC3O15379 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
HDAC3O15379 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HDAC3O15379 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.94■□□□□ 0.46
HDAC3O15379 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC3O15379 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC3O15379 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC3O15379 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC3O15379 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HDAC3O15379 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.93■□□□□ 0.46
HDAC3O15379 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
HDAC3O15379 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 PHGDH-209ENST00000641074 1780 ntBASIC17.93■□□□□ 0.46
HDAC3O15379 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
HDAC3O15379 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC3O15379 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HDAC3O15379 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC3O15379 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC3O15379 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.92■□□□□ 0.46
HDAC3O15379 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HDAC3O15379 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.92■□□□□ 0.46
HDAC3O15379 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms