Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.32■■□□□ 1.32
PCDHGA9Q9Y5G4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGA9Q9Y5G4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.31■■□□□ 1.32
PCDHGA9Q9Y5G4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 AL157400.5-201ENST00000507624 621 ntBASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHGA9Q9Y5G4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
PCDHGA9Q9Y5G4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.29■■□□□ 1.32
PCDHGA9Q9Y5G4 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.29■■□□□ 1.32
PCDHGA9Q9Y5G4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHGA9Q9Y5G4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.28■■□□□ 1.32
PCDHGA9Q9Y5G4 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA9Q9Y5G4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
PCDHGA9Q9Y5G4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA9Q9Y5G4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA9Q9Y5G4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 AC007029.1-201ENST00000604183 313 ntBASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA9Q9Y5G4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
PCDHGA9Q9Y5G4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 AP004833.2-201ENST00000532228 1454 ntBASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
PCDHGA9Q9Y5G4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.23■■□□□ 1.31
PCDHGA9Q9Y5G4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHGA9Q9Y5G4 RARRES2P1-201ENST00000474487 481 ntBASIC23.23■■□□□ 1.31
PCDHGA9Q9Y5G4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHGA9Q9Y5G4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHGA9Q9Y5G4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHGA9Q9Y5G4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
PCDHGA9Q9Y5G4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHGA9Q9Y5G4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
PCDHGA9Q9Y5G4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA9Q9Y5G4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHGA9Q9Y5G4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHGA9Q9Y5G4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.2■■□□□ 1.3
PCDHGA9Q9Y5G4 AC129492.7-201ENST00000622992 756 ntBASIC23.2■■□□□ 1.3
PCDHGA9Q9Y5G4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
PCDHGA9Q9Y5G4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHGA9Q9Y5G4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHGA9Q9Y5G4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
PCDHGA9Q9Y5G4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHGA9Q9Y5G4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PCDHGA9Q9Y5G4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA9Q9Y5G4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 AC133552.2-201ENST00000619106 1032 ntBASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA9Q9Y5G4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 AC009831.1-201ENST00000580420 1582 ntBASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 AL592293.1-201ENST00000502889 1188 ntBASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 SMPD5-203ENST00000639008 1464 ntBASIC23.16■■□□□ 1.3
PCDHGA9Q9Y5G4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 AC142086.6-201ENST00000621154 1765 ntBASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.15■■□□□ 1.3
PCDHGA9Q9Y5G4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms