Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
USHBP1Q8N6Y0 RARRES2P1-201ENST00000474487 481 ntBASIC33.39■■■□□ 2.94
USHBP1Q8N6Y0 DUX4L18-201ENST00000553347 1267 ntBASIC33.39■■■□□ 2.94
USHBP1Q8N6Y0 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
USHBP1Q8N6Y0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC33.38■■■□□ 2.93
USHBP1Q8N6Y0 AC133552.2-201ENST00000619106 1032 ntBASIC33.38■■■□□ 2.93
USHBP1Q8N6Y0 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
USHBP1Q8N6Y0 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC33.37■■■□□ 2.93
USHBP1Q8N6Y0 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC33.37■■■□□ 2.93
USHBP1Q8N6Y0 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 SMPD5-203ENST00000639008 1464 ntBASIC33.36■■■□□ 2.93
USHBP1Q8N6Y0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC33.35■■■□□ 2.93
USHBP1Q8N6Y0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
USHBP1Q8N6Y0 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
USHBP1Q8N6Y0 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 REST-210ENST00000638187 1334 ntTSL 5 BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC33.33■■■□□ 2.93
USHBP1Q8N6Y0 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC33.32■■■□□ 2.92
USHBP1Q8N6Y0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.31■■■□□ 2.92
USHBP1Q8N6Y0 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
USHBP1Q8N6Y0 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC33.3■■■□□ 2.92
USHBP1Q8N6Y0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
USHBP1Q8N6Y0 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC33.29■■■□□ 2.92
USHBP1Q8N6Y0 AC026202.3-201ENST00000600805 1127 ntBASIC33.29■■■□□ 2.92
USHBP1Q8N6Y0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
USHBP1Q8N6Y0 ABCB10P1-201ENST00000614297 2181 ntBASIC33.28■■■□□ 2.92
USHBP1Q8N6Y0 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC33.28■■■□□ 2.92
USHBP1Q8N6Y0 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC33.28■■■□□ 2.92
USHBP1Q8N6Y0 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC33.27■■■□□ 2.92
USHBP1Q8N6Y0 AC025884.2-201ENST00000553429 711 ntBASIC33.27■■■□□ 2.92
USHBP1Q8N6Y0 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC33.26■■■□□ 2.92
USHBP1Q8N6Y0 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
USHBP1Q8N6Y0 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
USHBP1Q8N6Y0 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC33.25■■■□□ 2.91
USHBP1Q8N6Y0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC33.25■■■□□ 2.91
USHBP1Q8N6Y0 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
USHBP1Q8N6Y0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
USHBP1Q8N6Y0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
USHBP1Q8N6Y0 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
USHBP1Q8N6Y0 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
USHBP1Q8N6Y0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
USHBP1Q8N6Y0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC33.22■■■□□ 2.91
USHBP1Q8N6Y0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC33.22■■■□□ 2.91
USHBP1Q8N6Y0 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC33.22■■■□□ 2.91
USHBP1Q8N6Y0 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
USHBP1Q8N6Y0 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
USHBP1Q8N6Y0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC33.2■■■□□ 2.91
USHBP1Q8N6Y0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC33.2■■■□□ 2.91
USHBP1Q8N6Y0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
USHBP1Q8N6Y0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC33.2■■■□□ 2.9
USHBP1Q8N6Y0 AP002414.2-202ENST00000590929 1450 ntBASIC33.19■■■□□ 2.9
USHBP1Q8N6Y0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC33.19■■■□□ 2.9
USHBP1Q8N6Y0 HES4-204ENST00000484667 667 ntTSL 3 BASIC33.18■■■□□ 2.9
USHBP1Q8N6Y0 AC093536.1-201ENST00000569153 554 ntBASIC33.18■■■□□ 2.9
USHBP1Q8N6Y0 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USHBP1Q8N6Y0 DUX4L9-201ENST00000449051 1259 ntBASIC33.17■■■□□ 2.9
USHBP1Q8N6Y0 SPCS2P3-201ENST00000500401 656 ntBASIC33.17■■■□□ 2.9
USHBP1Q8N6Y0 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC33.17■■■□□ 2.9
USHBP1Q8N6Y0 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC33.17■■■□□ 2.9
USHBP1Q8N6Y0 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC33.17■■■□□ 2.9
USHBP1Q8N6Y0 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USHBP1Q8N6Y0 RP9P-202ENST00000450133 1212 ntBASIC33.16■■■□□ 2.9
USHBP1Q8N6Y0 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC33.16■■■□□ 2.9
USHBP1Q8N6Y0 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USHBP1Q8N6Y0 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
USHBP1Q8N6Y0 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
USHBP1Q8N6Y0 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
USHBP1Q8N6Y0 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC33.15■■■□□ 2.9
USHBP1Q8N6Y0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC33.14■■■□□ 2.9
USHBP1Q8N6Y0 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC33.13■■■□□ 2.89
USHBP1Q8N6Y0 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC33.13■■■□□ 2.89
USHBP1Q8N6Y0 RAP2CP1-202ENST00000605179 643 ntBASIC33.13■■■□□ 2.89
USHBP1Q8N6Y0 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms