Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC27.33■■□□□ 1.97
CCDC40Q4G0X9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.33■■□□□ 1.97
CCDC40Q4G0X9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.32■■□□□ 1.96
CCDC40Q4G0X9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.32■■□□□ 1.96
CCDC40Q4G0X9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.32■■□□□ 1.96
CCDC40Q4G0X9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC40Q4G0X9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
CCDC40Q4G0X9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC40Q4G0X9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC40Q4G0X9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC40Q4G0X9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC40Q4G0X9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
CCDC40Q4G0X9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC40Q4G0X9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.29■■□□□ 1.96
CCDC40Q4G0X9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CCDC40Q4G0X9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CCDC40Q4G0X9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC40Q4G0X9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC40Q4G0X9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC40Q4G0X9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.28■■□□□ 1.96
CCDC40Q4G0X9 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L13-201ENST00000554103 1267 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L15-201ENST00000611059 1267 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L23-201ENST00000615195 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L24-201ENST00000617576 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L22-201ENST00000618238 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L20-201ENST00000619712 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L21-201ENST00000622058 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L10-201ENST00000622460 1267 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DUX4L25-201ENST00000624915 1269 ntBASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC40Q4G0X9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
CCDC40Q4G0X9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
CCDC40Q4G0X9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.26■■□□□ 1.95
CCDC40Q4G0X9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC40Q4G0X9 DUX4L11-201ENST00000611504 1267 ntBASIC27.26■■□□□ 1.95
CCDC40Q4G0X9 DUX4L12-201ENST00000614593 1267 ntBASIC27.26■■□□□ 1.95
CCDC40Q4G0X9 DUX4L14-201ENST00000621227 1267 ntBASIC27.26■■□□□ 1.95
CCDC40Q4G0X9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 ZNRF2P2-203ENST00000454624 420 ntBASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC40Q4G0X9 AL449106.1-201ENST00000608517 1980 ntBASIC27.24■■□□□ 1.95
CCDC40Q4G0X9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.24■■□□□ 1.95
CCDC40Q4G0X9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC40Q4G0X9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC40Q4G0X9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CCDC40Q4G0X9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
CCDC40Q4G0X9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.22■■□□□ 1.95
CCDC40Q4G0X9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.21■■□□□ 1.95
CCDC40Q4G0X9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC40Q4G0X9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC40Q4G0X9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CCDC40Q4G0X9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
CCDC40Q4G0X9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC40Q4G0X9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC40Q4G0X9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.19■■□□□ 1.94
CCDC40Q4G0X9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC40Q4G0X9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC40Q4G0X9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 WHAMMP3-201ENST00000611636 1609 ntBASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC40Q4G0X9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CCDC40Q4G0X9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC40Q4G0X9 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.17■■□□□ 1.94
CCDC40Q4G0X9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
CCDC40Q4G0X9 AP004609.3-201ENST00000610705 1884 ntBASIC27.17■■□□□ 1.94
CCDC40Q4G0X9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC40Q4G0X9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC40Q4G0X9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.15■■□□□ 1.94
CCDC40Q4G0X9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC40Q4G0X9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC40Q4G0X9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
CCDC40Q4G0X9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC40Q4G0X9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
CCDC40Q4G0X9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC40Q4G0X9 ABHD17AP4-201ENST00000411545 909 ntBASIC27.13■■□□□ 1.93
CCDC40Q4G0X9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.13■■□□□ 1.93
CCDC40Q4G0X9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.13■■□□□ 1.93
CCDC40Q4G0X9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC40Q4G0X9 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.12■■□□□ 1.93
CCDC40Q4G0X9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC40Q4G0X9 AC008813.1-201ENST00000536597 885 ntBASIC27.12■■□□□ 1.93
CCDC40Q4G0X9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms