Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.52■■■□□ 2.32
SHROOM1Q2M3G4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 AC004987.1-201ENST00000428627 508 ntBASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM1Q2M3G4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.5■■■□□ 2.31
SHROOM1Q2M3G4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM1Q2M3G4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM1Q2M3G4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM1Q2M3G4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM1Q2M3G4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM1Q2M3G4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.47■■■□□ 2.31
SHROOM1Q2M3G4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM1Q2M3G4 AC007029.1-201ENST00000604183 313 ntBASIC29.47■■■□□ 2.31
SHROOM1Q2M3G4 AP002414.2-202ENST00000590929 1450 ntBASIC29.47■■■□□ 2.31
SHROOM1Q2M3G4 AC139426.1-201ENST00000568218 2529 ntBASIC29.46■■■□□ 2.31
SHROOM1Q2M3G4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM1Q2M3G4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM1Q2M3G4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM1Q2M3G4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
SHROOM1Q2M3G4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM1Q2M3G4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM1Q2M3G4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.45■■■□□ 2.3
SHROOM1Q2M3G4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM1Q2M3G4 ATP5G2P3-201ENST00000429083 425 ntBASIC29.44■■■□□ 2.3
SHROOM1Q2M3G4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC29.44■■■□□ 2.3
SHROOM1Q2M3G4 AC009831.1-201ENST00000580420 1582 ntBASIC29.43■■■□□ 2.3
SHROOM1Q2M3G4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.43■■■□□ 2.3
SHROOM1Q2M3G4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM1Q2M3G4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.43■■■□□ 2.3
SHROOM1Q2M3G4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM1Q2M3G4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM1Q2M3G4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM1Q2M3G4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC29.42■■■□□ 2.3
SHROOM1Q2M3G4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
SHROOM1Q2M3G4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC29.41■■■□□ 2.3
SHROOM1Q2M3G4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC29.41■■■□□ 2.3
SHROOM1Q2M3G4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
SHROOM1Q2M3G4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SHROOM1Q2M3G4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SHROOM1Q2M3G4 TSPY13P-201ENST00000338964 914 ntBASIC29.4■■■□□ 2.3
SHROOM1Q2M3G4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC29.4■■■□□ 2.3
SHROOM1Q2M3G4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC29.39■■■□□ 2.3
SHROOM1Q2M3G4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.29
SHROOM1Q2M3G4 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 SMPD5-203ENST00000639008 1464 ntBASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 AL592293.1-201ENST00000502889 1188 ntBASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC29.38■■■□□ 2.29
SHROOM1Q2M3G4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
SHROOM1Q2M3G4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
SHROOM1Q2M3G4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC29.37■■■□□ 2.29
SHROOM1Q2M3G4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 AC129492.7-201ENST00000622992 756 ntBASIC29.36■■■□□ 2.29
SHROOM1Q2M3G4 AC025884.2-201ENST00000553429 711 ntBASIC29.35■■■□□ 2.29
SHROOM1Q2M3G4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM1Q2M3G4 AC133552.2-201ENST00000619106 1032 ntBASIC29.34■■■□□ 2.29
SHROOM1Q2M3G4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC29.34■■■□□ 2.29
SHROOM1Q2M3G4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
SHROOM1Q2M3G4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC29.34■■■□□ 2.29
SHROOM1Q2M3G4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
SHROOM1Q2M3G4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC29.33■■■□□ 2.29
SHROOM1Q2M3G4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC29.33■■■□□ 2.29
SHROOM1Q2M3G4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM1Q2M3G4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM1Q2M3G4 DUX4L18-201ENST00000553347 1267 ntBASIC29.32■■■□□ 2.28
SHROOM1Q2M3G4 AC026202.3-201ENST00000600805 1127 ntBASIC29.32■■■□□ 2.28
SHROOM1Q2M3G4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
SHROOM1Q2M3G4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM1Q2M3G4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM1Q2M3G4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
SHROOM1Q2M3G4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
SHROOM1Q2M3G4 REST-210ENST00000638187 1334 ntTSL 5 BASIC29.3■■■□□ 2.28
SHROOM1Q2M3G4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM1Q2M3G4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms