Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.97■■□□□ 1.75
CDH6P55285 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.97■■□□□ 1.75
CDH6P55285 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.97■■□□□ 1.75
CDH6P55285 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CDH6P55285 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CDH6P55285 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.96■■□□□ 1.75
CDH6P55285 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CDH6P55285 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CDH6P55285 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CDH6P55285 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CDH6P55285 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.94■■□□□ 1.74
CDH6P55285 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
CDH6P55285 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.93■■□□□ 1.74
CDH6P55285 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.92■■□□□ 1.74
CDH6P55285 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CDH6P55285 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
CDH6P55285 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
CDH6P55285 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
CDH6P55285 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.91■■□□□ 1.74
CDH6P55285 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
CDH6P55285 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CDH6P55285 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CDH6P55285 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
CDH6P55285 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
CDH6P55285 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
CDH6P55285 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.9■■□□□ 1.74
CDH6P55285 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.9■■□□□ 1.74
CDH6P55285 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CDH6P55285 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.74
CDH6P55285 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CDH6P55285 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CDH6P55285 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
CDH6P55285 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CDH6P55285 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.88■■□□□ 1.73
CDH6P55285 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.88■■□□□ 1.73
CDH6P55285 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.88■■□□□ 1.73
CDH6P55285 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
CDH6P55285 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.87■■□□□ 1.73
CDH6P55285 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.87■■□□□ 1.73
CDH6P55285 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CDH6P55285 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CDH6P55285 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CDH6P55285 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.86■■□□□ 1.73
CDH6P55285 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
CDH6P55285 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CDH6P55285 AL449106.1-201ENST00000608517 1980 ntBASIC25.86■■□□□ 1.73
CDH6P55285 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CDH6P55285 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.85■■□□□ 1.73
CDH6P55285 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CDH6P55285 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CDH6P55285 MIR7108-201ENST00000614319 87 ntBASIC25.85■■□□□ 1.73
CDH6P55285 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CDH6P55285 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.85■■□□□ 1.73
CDH6P55285 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CDH6P55285 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CDH6P55285 AC008813.1-201ENST00000536597 885 ntBASIC25.84■■□□□ 1.73
CDH6P55285 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CDH6P55285 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CDH6P55285 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.83■■□□□ 1.73
CDH6P55285 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CDH6P55285 CR559946.2-201ENST00000623684 991 ntBASIC25.83■■□□□ 1.73
CDH6P55285 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.83■■□□□ 1.72
CDH6P55285 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CDH6P55285 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.82■■□□□ 1.72
CDH6P55285 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CDH6P55285 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CDH6P55285 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CDH6P55285 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.81■■□□□ 1.72
CDH6P55285 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CDH6P55285 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CDH6P55285 WHAMMP3-201ENST00000611636 1609 ntBASIC25.81■■□□□ 1.72
CDH6P55285 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
CDH6P55285 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CDH6P55285 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.8■■□□□ 1.72
CDH6P55285 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
CDH6P55285 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
CDH6P55285 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
CDH6P55285 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.78■■□□□ 1.72
CDH6P55285 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CDH6P55285 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CDH6P55285 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
CDH6P55285 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.78■■□□□ 1.72
CDH6P55285 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.78■■□□□ 1.72
CDH6P55285 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
CDH6P55285 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.77■■□□□ 1.72
CDH6P55285 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CDH6P55285 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CDH6P55285 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CDH6P55285 HLA-V-202ENST00000446817 847 ntBASIC25.77■■□□□ 1.72
CDH6P55285 MIR3648-2-201ENST00000581792 180 ntBASIC25.77■■□□□ 1.72
CDH6P55285 MIR3648-1-201ENST00000615959 180 ntBASIC25.77■■□□□ 1.72
CDH6P55285 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.77■■□□□ 1.72
CDH6P55285 MIR219A2-201ENST00000608502 1504 ntBASIC25.77■■□□□ 1.72
CDH6P55285 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
CDH6P55285 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
CDH6P55285 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
CDH6P55285 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CDH6P55285 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
CDH6P55285 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.75■■□□□ 1.71
CDH6P55285 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms