Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.36■■□□□ 1.33
SOX3P41225 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX3P41225 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX3P41225 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX3P41225 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SOX3P41225 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.35■■□□□ 1.33
SOX3P41225 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.35■■□□□ 1.33
SOX3P41225 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.34■■□□□ 1.33
SOX3P41225 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.34■■□□□ 1.33
SOX3P41225 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.33
SOX3P41225 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
SOX3P41225 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SOX3P41225 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.33■■□□□ 1.33
SOX3P41225 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.33■■□□□ 1.33
SOX3P41225 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SOX3P41225 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
SOX3P41225 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SOX3P41225 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
SOX3P41225 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
SOX3P41225 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SOX3P41225 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.32■■□□□ 1.32
SOX3P41225 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SOX3P41225 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.32■■□□□ 1.32
SOX3P41225 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SOX3P41225 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SOX3P41225 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX3P41225 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX3P41225 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX3P41225 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.31■■□□□ 1.32
SOX3P41225 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
SOX3P41225 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX3P41225 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
SOX3P41225 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX3P41225 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.3■■□□□ 1.32
SOX3P41225 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.3■■□□□ 1.32
SOX3P41225 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX3P41225 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.29■■□□□ 1.32
SOX3P41225 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX3P41225 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.29■■□□□ 1.32
SOX3P41225 AC148477.6-201ENST00000623746 465 ntBASIC23.29■■□□□ 1.32
SOX3P41225 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX3P41225 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.28■■□□□ 1.32
SOX3P41225 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SOX3P41225 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
SOX3P41225 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SOX3P41225 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SOX3P41225 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.28■■□□□ 1.32
SOX3P41225 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.27■■□□□ 1.32
SOX3P41225 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.27■■□□□ 1.32
SOX3P41225 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SOX3P41225 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.27■■□□□ 1.32
SOX3P41225 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
SOX3P41225 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 HSD17B1P1-201ENST00000590052 955 ntBASIC23.26■■□□□ 1.31
SOX3P41225 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
SOX3P41225 MIR219A2-201ENST00000608502 1504 ntBASIC23.26■■□□□ 1.31
SOX3P41225 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SOX3P41225 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.26■■□□□ 1.31
SOX3P41225 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
SOX3P41225 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.25■■□□□ 1.31
SOX3P41225 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
SOX3P41225 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SOX3P41225 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
SOX3P41225 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SOX3P41225 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
SOX3P41225 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SOX3P41225 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 AP002414.2-202ENST00000590929 1450 ntBASIC23.23■■□□□ 1.31
SOX3P41225 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SOX3P41225 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
SOX3P41225 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.22■■□□□ 1.31
SOX3P41225 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SOX3P41225 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SOX3P41225 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.21■■□□□ 1.31
SOX3P41225 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
SOX3P41225 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SOX3P41225 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SOX3P41225 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SOX3P41225 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
SOX3P41225 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
SOX3P41225 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SOX3P41225 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SOX3P41225 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SOX3P41225 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SOX3P41225 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms