Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TSPY13P-201ENST00000338964 914 ntBASIC21.06■□□□□ 0.96
USF1P22415 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USF1P22415 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USF1P22415 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.05■□□□□ 0.96
USF1P22415 KRT18P60-201ENST00000312876 1297 ntBASIC21.05■□□□□ 0.96
USF1P22415 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.05■□□□□ 0.96
USF1P22415 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USF1P22415 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USF1P22415 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.04■□□□□ 0.96
USF1P22415 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.04■□□□□ 0.96
USF1P22415 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USF1P22415 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USF1P22415 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.03■□□□□ 0.96
USF1P22415 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USF1P22415 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.03■□□□□ 0.96
USF1P22415 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USF1P22415 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USF1P22415 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USF1P22415 AP004833.2-201ENST00000532228 1454 ntBASIC21.02■□□□□ 0.96
USF1P22415 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
USF1P22415 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.02■□□□□ 0.96
USF1P22415 AC004987.1-201ENST00000428627 508 ntBASIC21.02■□□□□ 0.96
USF1P22415 ATP5G2P3-201ENST00000429083 425 ntBASIC21.02■□□□□ 0.96
USF1P22415 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USF1P22415 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
USF1P22415 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.02■□□□□ 0.96
USF1P22415 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USF1P22415 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USF1P22415 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.01■□□□□ 0.95
USF1P22415 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USF1P22415 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USF1P22415 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21■□□□□ 0.95
USF1P22415 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21■□□□□ 0.95
USF1P22415 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USF1P22415 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21■□□□□ 0.95
USF1P22415 REST-210ENST00000638187 1334 ntTSL 5 BASIC21■□□□□ 0.95
USF1P22415 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USF1P22415 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USF1P22415 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USF1P22415 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
USF1P22415 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.98■□□□□ 0.95
USF1P22415 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
USF1P22415 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USF1P22415 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USF1P22415 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USF1P22415 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.98■□□□□ 0.95
USF1P22415 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.98■□□□□ 0.95
USF1P22415 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.98■□□□□ 0.95
USF1P22415 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
USF1P22415 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USF1P22415 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
USF1P22415 AL157400.5-201ENST00000507624 621 ntBASIC20.97■□□□□ 0.95
USF1P22415 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.97■□□□□ 0.95
USF1P22415 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.96■□□□□ 0.95
USF1P22415 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
USF1P22415 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.96■□□□□ 0.95
USF1P22415 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USF1P22415 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USF1P22415 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USF1P22415 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USF1P22415 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USF1P22415 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
USF1P22415 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.95■□□□□ 0.94
USF1P22415 AC007029.1-201ENST00000604183 313 ntBASIC20.95■□□□□ 0.94
USF1P22415 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USF1P22415 AL139393.2-201ENST00000608721 2025 ntBASIC20.95■□□□□ 0.94
USF1P22415 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USF1P22415 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USF1P22415 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USF1P22415 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.94■□□□□ 0.94
USF1P22415 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.94■□□□□ 0.94
USF1P22415 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.94■□□□□ 0.94
USF1P22415 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.94■□□□□ 0.94
USF1P22415 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USF1P22415 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USF1P22415 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USF1P22415 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USF1P22415 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.92■□□□□ 0.94
USF1P22415 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USF1P22415 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.92■□□□□ 0.94
USF1P22415 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USF1P22415 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USF1P22415 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USF1P22415 AC100797.4-201ENST00000631653 1827 ntBASIC20.91■□□□□ 0.94
USF1P22415 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USF1P22415 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.9■□□□□ 0.94
USF1P22415 AL359258.2-201ENST00000564063 1566 ntBASIC20.9■□□□□ 0.94
USF1P22415 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USF1P22415 SMPD5-203ENST00000639008 1464 ntBASIC20.9■□□□□ 0.94
USF1P22415 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USF1P22415 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USF1P22415 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USF1P22415 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USF1P22415 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USF1P22415 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USF1P22415 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USF1P22415 AC133552.2-201ENST00000619106 1032 ntBASIC20.89■□□□□ 0.93
USF1P22415 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.89■□□□□ 0.93
USF1P22415 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 681.2 ms