Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
SEMA3DO95025 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.83■■□□□ 1.41
SEMA3DO95025 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.83■■□□□ 1.41
SEMA3DO95025 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
SEMA3DO95025 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.83■■□□□ 1.4
SEMA3DO95025 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SEMA3DO95025 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA3DO95025 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.81■■□□□ 1.4
SEMA3DO95025 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.81■■□□□ 1.4
SEMA3DO95025 AC135731.1-201ENST00000569415 2548 ntBASIC23.81■■□□□ 1.4
SEMA3DO95025 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA3DO95025 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA3DO95025 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA3DO95025 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SEMA3DO95025 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
SEMA3DO95025 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SEMA3DO95025 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.79■■□□□ 1.4
SEMA3DO95025 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SEMA3DO95025 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA3DO95025 CR559946.2-201ENST00000623684 991 ntBASIC23.78■■□□□ 1.4
SEMA3DO95025 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
SEMA3DO95025 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA3DO95025 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA3DO95025 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.77■■□□□ 1.4
SEMA3DO95025 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA3DO95025 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA3DO95025 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA3DO95025 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
SEMA3DO95025 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA3DO95025 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
SEMA3DO95025 AC148477.6-201ENST00000623746 465 ntBASIC23.76■■□□□ 1.39
SEMA3DO95025 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.76■■□□□ 1.39
SEMA3DO95025 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
SEMA3DO95025 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA3DO95025 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.75■■□□□ 1.39
SEMA3DO95025 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.75■■□□□ 1.39
SEMA3DO95025 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.75■■□□□ 1.39
SEMA3DO95025 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
SEMA3DO95025 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA3DO95025 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SEMA3DO95025 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA3DO95025 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA3DO95025 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
SEMA3DO95025 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.74■■□□□ 1.39
SEMA3DO95025 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.74■■□□□ 1.39
SEMA3DO95025 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA3DO95025 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SEMA3DO95025 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SEMA3DO95025 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.73■■□□□ 1.39
SEMA3DO95025 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.73■■□□□ 1.39
SEMA3DO95025 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SEMA3DO95025 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.73■■□□□ 1.39
SEMA3DO95025 WHAMMP3-201ENST00000611636 1609 ntBASIC23.73■■□□□ 1.39
SEMA3DO95025 MIR3648-2-201ENST00000581792 180 ntBASIC23.72■■□□□ 1.39
SEMA3DO95025 MIR3648-1-201ENST00000615959 180 ntBASIC23.72■■□□□ 1.39
SEMA3DO95025 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SEMA3DO95025 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SEMA3DO95025 AL449106.1-201ENST00000608517 1980 ntBASIC23.71■■□□□ 1.39
SEMA3DO95025 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
SEMA3DO95025 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SEMA3DO95025 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
SEMA3DO95025 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
SEMA3DO95025 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SEMA3DO95025 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.7■■□□□ 1.38
SEMA3DO95025 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.7■■□□□ 1.38
SEMA3DO95025 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SEMA3DO95025 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SEMA3DO95025 MIR219A2-201ENST00000608502 1504 ntBASIC23.69■■□□□ 1.38
SEMA3DO95025 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SEMA3DO95025 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.69■■□□□ 1.38
SEMA3DO95025 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SEMA3DO95025 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SEMA3DO95025 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SEMA3DO95025 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SEMA3DO95025 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SEMA3DO95025 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SEMA3DO95025 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SEMA3DO95025 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SEMA3DO95025 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SEMA3DO95025 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.68■■□□□ 1.38
SEMA3DO95025 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.68■■□□□ 1.38
SEMA3DO95025 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SEMA3DO95025 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.67■■□□□ 1.38
SEMA3DO95025 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SEMA3DO95025 HLA-V-202ENST00000446817 847 ntBASIC23.67■■□□□ 1.38
SEMA3DO95025 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SEMA3DO95025 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SEMA3DO95025 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SEMA3DO95025 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.66■■□□□ 1.38
SEMA3DO95025 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SEMA3DO95025 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SEMA3DO95025 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
SEMA3DO95025 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.66■■□□□ 1.38
SEMA3DO95025 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
SEMA3DO95025 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms