Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 HTR7P1-201ENST00000538670 1336 ntBASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 SIRPAP1-201ENST00000448467 1770 ntBASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 GLI3-203ENST00000437480 451 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CEP83-AS1-201ENST00000623122 2482 ntBASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
UBE2D4Q9Y2X8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 AC133041.1-202ENST00000642053 222 ntBASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC12.85□□□□□ -0.35
UBE2D4Q9Y2X8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 PKD1P1-201ENST00000458669 6805 ntBASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
UBE2D4Q9Y2X8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms