Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM4Q9C037 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TRIM4Q9C037 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM4Q9C037 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM4Q9C037 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM4Q9C037 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM4Q9C037 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 AC026396.1-201ENST00000419388 421 ntBASIC18.4■□□□□ 0.54
TRIM4Q9C037 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 AC010203.1-204ENST00000548782 407 ntBASIC18.4■□□□□ 0.54
TRIM4Q9C037 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM4Q9C037 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM4Q9C037 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.39■□□□□ 0.54
TRIM4Q9C037 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM4Q9C037 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM4Q9C037 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM4Q9C037 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 NUDT16P1-203ENST00000513809 620 ntBASIC18.39■□□□□ 0.53
TRIM4Q9C037 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 AC006011.2-201ENST00000621313 1158 ntBASIC18.39■□□□□ 0.53
TRIM4Q9C037 AC010947.1-201ENST00000623454 693 ntBASIC18.39■□□□□ 0.53
TRIM4Q9C037 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM4Q9C037 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TRIM4Q9C037 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 CRYGFP-201ENST00000418459 633 ntBASIC18.38■□□□□ 0.53
TRIM4Q9C037 AL353807.1-201ENST00000427475 662 ntBASIC18.38■□□□□ 0.53
TRIM4Q9C037 ATP5G1P1-201ENST00000448724 379 ntBASIC18.38■□□□□ 0.53
TRIM4Q9C037 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 AC091076.1-201ENST00000610741 619 ntBASIC18.38■□□□□ 0.53
TRIM4Q9C037 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms