Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 AL132655.2-201ENST00000596276 594 ntBASIC18.65■□□□□ 0.58
TTC28Q96AY4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 ZNF815P-204ENST00000434898 1737 ntBASIC18.65■□□□□ 0.58
TTC28Q96AY4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 AC108073.2-201ENST00000464002 357 ntBASIC18.65■□□□□ 0.58
TTC28Q96AY4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TTC28Q96AY4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
TTC28Q96AY4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.64■□□□□ 0.58
TTC28Q96AY4 LINC02560-201ENST00000596379 459 ntBASIC18.64■□□□□ 0.58
TTC28Q96AY4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 AC116407.2-201ENST00000613639 860 ntBASIC18.64■□□□□ 0.57
TTC28Q96AY4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 AC006128.1-201ENST00000624704 1661 ntBASIC18.64■□□□□ 0.57
TTC28Q96AY4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TTC28Q96AY4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.64■□□□□ 0.57
TTC28Q96AY4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TTC28Q96AY4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TTC28Q96AY4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.62■□□□□ 0.57
TTC28Q96AY4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 AC133561.1-201ENST00000568600 2415 ntBASIC18.62■□□□□ 0.57
TTC28Q96AY4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 AC067863.1-201ENST00000494933 530 ntBASIC18.62■□□□□ 0.57
TTC28Q96AY4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.62■□□□□ 0.57
TTC28Q96AY4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TTC28Q96AY4 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AP005212.1-201ENST00000581547 1997 ntBASIC18.61■□□□□ 0.57
TTC28Q96AY4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms