Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.3■□□□□ 0.2
SKA3Q8IX90 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SKA3Q8IX90 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC112777.1-201ENST00000540175 1423 ntBASIC16.29■□□□□ 0.2
SKA3Q8IX90 FZD10-202ENST00000539839 3282 ntBASIC16.29■□□□□ 0.2
SKA3Q8IX90 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 LIN28AP1-201ENST00000429574 405 ntBASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC009947.2-201ENST00000444014 672 ntBASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC010203.1-204ENST00000548782 407 ntBASIC16.29■□□□□ 0.2
SKA3Q8IX90 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.29■□□□□ 0.2
SKA3Q8IX90 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SKA3Q8IX90 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 AC126763.1-201ENST00000552015 2118 ntBASIC16.28■□□□□ 0.2
SKA3Q8IX90 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.28■□□□□ 0.2
SKA3Q8IX90 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 KRT18P23-201ENST00000435622 1283 ntBASIC16.28■□□□□ 0.2
SKA3Q8IX90 KRT18P41-201ENST00000518924 1277 ntBASIC16.28■□□□□ 0.2
SKA3Q8IX90 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SKA3Q8IX90 AL138966.2-201ENST00000621997 464 ntBASIC16.28■□□□□ 0.2
SKA3Q8IX90 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
SKA3Q8IX90 MYC-208ENST00000641036 567 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms