Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.73■□□□□ 0.59
USP39Q53GS9 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.73■□□□□ 0.59
USP39Q53GS9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.73■□□□□ 0.59
USP39Q53GS9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
USP39Q53GS9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
USP39Q53GS9 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP39Q53GS9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.73■□□□□ 0.59
USP39Q53GS9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.72■□□□□ 0.59
USP39Q53GS9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.72■□□□□ 0.59
USP39Q53GS9 KRT18P23-201ENST00000435622 1283 ntBASIC18.72■□□□□ 0.59
USP39Q53GS9 AC104819.1-201ENST00000504587 486 ntBASIC18.72■□□□□ 0.59
USP39Q53GS9 KRT18P31-201ENST00000506277 1292 ntBASIC18.72■□□□□ 0.59
USP39Q53GS9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.72■□□□□ 0.59
USP39Q53GS9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.72■□□□□ 0.59
USP39Q53GS9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.72■□□□□ 0.59
USP39Q53GS9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP39Q53GS9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
USP39Q53GS9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
USP39Q53GS9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP39Q53GS9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP39Q53GS9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.71■□□□□ 0.59
USP39Q53GS9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.71■□□□□ 0.59
USP39Q53GS9 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.71■□□□□ 0.59
USP39Q53GS9 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.71■□□□□ 0.59
USP39Q53GS9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
USP39Q53GS9 AC104692.2-201ENST00000603054 253 ntBASIC18.71■□□□□ 0.59
USP39Q53GS9 IGHV3-41-201ENST00000613121 348 ntBASIC18.71■□□□□ 0.59
USP39Q53GS9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP39Q53GS9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP39Q53GS9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
USP39Q53GS9 Z83836.1-201ENST00000624605 1642 ntBASIC18.71■□□□□ 0.58
USP39Q53GS9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.7■□□□□ 0.58
USP39Q53GS9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.7■□□□□ 0.58
USP39Q53GS9 AC004408.2-201ENST00000623613 2777 ntBASIC18.7■□□□□ 0.58
USP39Q53GS9 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USP39Q53GS9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.7■□□□□ 0.58
USP39Q53GS9 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.7■□□□□ 0.58
USP39Q53GS9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.7■□□□□ 0.58
USP39Q53GS9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.7■□□□□ 0.58
USP39Q53GS9 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.7■□□□□ 0.58
USP39Q53GS9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.7■□□□□ 0.58
USP39Q53GS9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
USP39Q53GS9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP39Q53GS9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.7■□□□□ 0.58
USP39Q53GS9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
USP39Q53GS9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 AL109659.2-201ENST00000606809 1674 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms