Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CR769767.2-201ENST00000622735 460 ntBASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.03■□□□□ 0.48
PTCHD3Q3KNS1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 YBX1P2-201ENST00000489612 999 ntBASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 AC022616.7-201ENST00000525383 220 ntBASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.02■□□□□ 0.48
PTCHD3Q3KNS1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 AC135050.7-201ENST00000624508 2218 ntBASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTCHD3Q3KNS1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 LETM1P2-201ENST00000597330 2178 ntBASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 BICD1-207ENST00000551848 1962 ntBASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 COX11P1-201ENST00000489116 835 ntBASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD3Q3KNS1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms