Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL136038.3-201ENST00000561909 1096 ntBASIC17.06■□□□□ 0.32
RNF4P78317 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.06■□□□□ 0.32
RNF4P78317 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RNF4P78317 AC093503.3-201ENST00000624917 2352 ntBASIC17.05■□□□□ 0.32
RNF4P78317 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
RNF4P78317 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF4P78317 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.05■□□□□ 0.32
RNF4P78317 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.05■□□□□ 0.32
RNF4P78317 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.05■□□□□ 0.32
RNF4P78317 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.05■□□□□ 0.32
RNF4P78317 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RNF4P78317 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RNF4P78317 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
RNF4P78317 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RNF4P78317 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.05■□□□□ 0.32
RNF4P78317 AC009102.3-201ENST00000623118 1491 ntBASIC17.05■□□□□ 0.32
RNF4P78317 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.05■□□□□ 0.32
RNF4P78317 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF4P78317 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RNF4P78317 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
RNF4P78317 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 SPDYE13P-201ENST00000445314 798 ntBASIC17.04■□□□□ 0.32
RNF4P78317 VENTXP5-201ENST00000523979 775 ntBASIC17.04■□□□□ 0.32
RNF4P78317 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.04■□□□□ 0.32
RNF4P78317 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.04■□□□□ 0.32
RNF4P78317 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.04■□□□□ 0.32
RNF4P78317 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RNF4P78317 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RNF4P78317 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNF4P78317 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RNF4P78317 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNF4P78317 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RNF4P78317 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
RNF4P78317 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RNF4P78317 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF4P78317 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF4P78317 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNF4P78317 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
RNF4P78317 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF4P78317 AC005332.1-201ENST00000577698 1310 ntBASIC17.03■□□□□ 0.32
RNF4P78317 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 PCED1CP-201ENST00000419887 785 ntBASIC17.03■□□□□ 0.32
RNF4P78317 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.03■□□□□ 0.32
RNF4P78317 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.03■□□□□ 0.32
RNF4P78317 AL358472.4-201ENST00000633140 710 ntBASIC17.03■□□□□ 0.32
RNF4P78317 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
RNF4P78317 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
RNF4P78317 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF4P78317 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 AC099343.3-201ENST00000605834 2503 ntBASIC17.03■□□□□ 0.32
RNF4P78317 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.03■□□□□ 0.32
RNF4P78317 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF4P78317 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms