Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.74■□□□□ 0.91
CIITAP33076 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.74■□□□□ 0.91
CIITAP33076 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.74■□□□□ 0.91
CIITAP33076 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CIITAP33076 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CIITAP33076 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CIITAP33076 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 AC011498.5-201ENST00000592027 486 ntBASIC20.73■□□□□ 0.91
CIITAP33076 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CIITAP33076 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.73■□□□□ 0.91
CIITAP33076 LINC01126-201ENST00000623515 1646 ntBASIC20.73■□□□□ 0.91
CIITAP33076 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CIITAP33076 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CIITAP33076 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 IGHGP-201ENST00000390555 1178 ntBASIC20.72■□□□□ 0.91
CIITAP33076 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 AP003733.1-201ENST00000491725 852 ntBASIC20.72■□□□□ 0.91
CIITAP33076 AC113404.2-201ENST00000507884 177 ntBASIC20.72■□□□□ 0.91
CIITAP33076 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 AC008687.5-201ENST00000593746 558 ntBASIC20.72■□□□□ 0.91
CIITAP33076 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.72■□□□□ 0.91
CIITAP33076 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.72■□□□□ 0.91
CIITAP33076 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.72■□□□□ 0.91
CIITAP33076 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CIITAP33076 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CIITAP33076 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.71■□□□□ 0.91
CIITAP33076 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CIITAP33076 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.71■□□□□ 0.91
CIITAP33076 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.71■□□□□ 0.91
CIITAP33076 AC005332.3-201ENST00000589904 676 ntBASIC20.71■□□□□ 0.91
CIITAP33076 AL390719.2-201ENST00000606993 987 ntBASIC20.71■□□□□ 0.91
CIITAP33076 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.71■□□□□ 0.91
CIITAP33076 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.71■□□□□ 0.91
CIITAP33076 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.71■□□□□ 0.91
CIITAP33076 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms