Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Z92544.3-201ENST00000624747 417 ntBASIC18.94■□□□□ 0.62
COL9A1P20849 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.94■□□□□ 0.62
COL9A1P20849 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.94■□□□□ 0.62
COL9A1P20849 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.93■□□□□ 0.62
COL9A1P20849 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.93■□□□□ 0.62
COL9A1P20849 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.93■□□□□ 0.62
COL9A1P20849 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.93■□□□□ 0.62
COL9A1P20849 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.93■□□□□ 0.62
COL9A1P20849 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL9A1P20849 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL9A1P20849 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 ELK2BP-201ENST00000415014 1224 ntBASIC18.93■□□□□ 0.62
COL9A1P20849 FGFR3P6-201ENST00000457012 610 ntBASIC18.93■□□□□ 0.62
COL9A1P20849 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.93■□□□□ 0.62
COL9A1P20849 AC009533.2-201ENST00000543664 586 ntBASIC18.93■□□□□ 0.62
COL9A1P20849 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.93■□□□□ 0.62
COL9A1P20849 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.93■□□□□ 0.62
COL9A1P20849 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL9A1P20849 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL9A1P20849 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL9A1P20849 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL9A1P20849 PCDHAC2-203ENST00000615316 3011 ntBASIC18.92■□□□□ 0.62
COL9A1P20849 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.92■□□□□ 0.62
COL9A1P20849 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL9A1P20849 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 RCC2P3-201ENST00000418112 1537 ntBASIC18.92■□□□□ 0.62
COL9A1P20849 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.92■□□□□ 0.62
COL9A1P20849 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.92■□□□□ 0.62
COL9A1P20849 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.92■□□□□ 0.62
COL9A1P20849 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.92■□□□□ 0.62
COL9A1P20849 MIR3917-201ENST00000580971 93 ntBASIC18.92■□□□□ 0.62
COL9A1P20849 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.92■□□□□ 0.62
COL9A1P20849 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.92■□□□□ 0.62
COL9A1P20849 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL9A1P20849 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL9A1P20849 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.91■□□□□ 0.62
COL9A1P20849 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
COL9A1P20849 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL9A1P20849 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.91■□□□□ 0.62
COL9A1P20849 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.91■□□□□ 0.62
COL9A1P20849 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
COL9A1P20849 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.91■□□□□ 0.62
COL9A1P20849 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.91■□□□□ 0.62
COL9A1P20849 AP003733.1-201ENST00000491725 852 ntBASIC18.91■□□□□ 0.62
COL9A1P20849 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.91■□□□□ 0.62
COL9A1P20849 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.91■□□□□ 0.62
COL9A1P20849 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.91■□□□□ 0.62
COL9A1P20849 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL9A1P20849 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 LINC01521-201ENST00000504184 1943 ntBASIC18.91■□□□□ 0.62
COL9A1P20849 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 AC008556.1-201ENST00000610908 2040 ntBASIC18.91■□□□□ 0.62
COL9A1P20849 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
COL9A1P20849 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL9A1P20849 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL9A1P20849 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.9■□□□□ 0.62
COL9A1P20849 AL512353.2-201ENST00000448759 1962 ntBASIC18.9■□□□□ 0.62
COL9A1P20849 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL9A1P20849 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms