Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PDCD6IP-206ENST00000457054 5962 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.541e-6■■□□□ 13.4
YBX3P16989 PSMA4-208ENST00000558639 733 ntTSL 310.17□□□□□ -0.782e-10■■□□□ 13.4
YBX3P16989 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.981e-6■■□□□ 13.4
YBX3P16989 CDYL-208ENST00000483019 773 ntTSL 213.85□□□□□ -0.192e-9■■□□□ 13.4
YBX3P16989 CDYL-204ENST00000440139 690 ntTSL 311.9□□□□□ -0.52e-9■■□□□ 13.4
YBX3P16989 CDYL-209ENST00000491864 614 ntTSL 58.1□□□□□ -1.112e-9■■□□□ 13.4
YBX3P16989 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.856e-7■■□□□ 13.4
YBX3P16989 SF3A2-207ENST00000592839 724 ntTSL 219.82■□□□□ 0.761e-9■■□□□ 13.4
YBX3P16989 ADI1-203ENST00000415131 654 ntTSL 320.13■□□□□ 0.819e-7■■□□□ 13.4
YBX3P16989 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.419e-7■■□□□ 13.4
YBX3P16989 NDUFA10-210ENST00000471378 582 ntTSL 312.58□□□□□ -0.41e-12■■□□□ 13.4
YBX3P16989 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC8.1□□□□□ -1.119e-7■■□□□ 13.4
YBX3P16989 FNBP4-210ENST00000531394 605 ntTSL 314.46□□□□□ -0.092e-9■■□□□ 13.4
YBX3P16989 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.472e-9■■□□□ 13.4
YBX3P16989 FNBP4-204ENST00000525792 840 ntTSL 38.92□□□□□ -0.982e-9■■□□□ 13.4
YBX3P16989 Y_RNA.110-201ENST00000363220 99 ntBASIC8.47□□□□□ -1.052e-9■■□□□ 13.4
YBX3P16989 IARS2-204ENST00000490891 447 ntTSL 310.21□□□□□ -0.779e-9■■□□□ 13.4
YBX3P16989 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.385e-7■■□□□ 13.4
YBX3P16989 DHX9-207ENST00000485081 2531 ntTSL 211.52□□□□□ -0.572e-9■■□□□ 13.4
YBX3P16989 GAS5-205ENST00000422008 497 ntTSL 35.61□□□□□ -1.511e-25■■□□□ 13.4
YBX3P16989 GPS1-214ENST00000581418 580 ntTSL 224.11■■□□□ 1.453e-7■■□□□ 13.4
YBX3P16989 GPS1-221ENST00000583961 581 ntTSL 522.71■■□□□ 1.233e-7■■□□□ 13.4
YBX3P16989 GPS1-216ENST00000582327 561 ntTSL 422.53■■□□□ 1.23e-7■■□□□ 13.4
YBX3P16989 GPS1-207ENST00000578392 552 ntTSL 421.81■■□□□ 1.083e-7■■□□□ 13.4
YBX3P16989 GPS1-211ENST00000580627 543 ntTSL 419.1■□□□□ 0.653e-7■■□□□ 13.4
YBX3P16989 GPS1-215ENST00000581578 470 ntTSL 416.77■□□□□ 0.283e-7■■□□□ 13.4
YBX3P16989 GPS1-217ENST00000583009 574 ntTSL 416.44■□□□□ 0.223e-7■■□□□ 13.4
YBX3P16989 GPS1-220ENST00000583885 594 ntTSL 415.85■□□□□ 0.133e-7■■□□□ 13.4
YBX3P16989 MMS19-201ENST00000327238 3165 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.381e-6■■□□□ 13.4
YBX3P16989 MMS19-209ENST00000438925 3797 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.431e-6■■□□□ 13.4
YBX3P16989 MMS19-204ENST00000415383 3401 ntTSL 1 (best)12.2□□□□□ -0.461e-6■■□□□ 13.4
YBX3P16989 MMS19-203ENST00000370782 3532 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.581e-6■■□□□ 13.4
YBX3P16989 MMS19-202ENST00000355839 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.751e-6■■□□□ 13.4
YBX3P16989 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.092e-6■■□□□ 13.3
YBX3P16989 STAU1-205ENST00000371802 3154 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.321e-7■■□□□ 13.3
YBX3P16989 STAU1-203ENST00000360426 3211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.351e-7■■□□□ 13.3
YBX3P16989 STAU1-201ENST00000340954 3334 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.591e-7■■□□□ 13.3
YBX3P16989 STAU1-202ENST00000347458 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.621e-7■■□□□ 13.3
YBX3P16989 STAU1-204ENST00000371792 3130 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.621e-7■■□□□ 13.3
YBX3P16989 ABCE1-209ENST00000510321 2529 ntTSL 211.06□□□□□ -0.643e-10■■□□□ 13.3
YBX3P16989 STAU1-206ENST00000371828 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.721e-7■■□□□ 13.3
YBX3P16989 STAU1-207ENST00000371856 3684 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.771e-7■■□□□ 13.3
YBX3P16989 STAU1-210ENST00000614381 3054 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.911e-7■■□□□ 13.3
YBX3P16989 ABCE1-205ENST00000504683 759 ntTSL 26.79□□□□□ -1.323e-10■■□□□ 13.3
YBX3P16989 ABCE1-210ENST00000515678 750 ntTSL 26.3□□□□□ -1.43e-10■■□□□ 13.3
YBX3P16989 ABCE1-208ENST00000509593 582 ntTSL 55.63□□□□□ -1.513e-10■■□□□ 13.3
YBX3P16989 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)10.94□□□□□ -0.661e-24■■□□□ 13.3
YBX3P16989 HSP90AA1-203ENST00000553585 581 ntTSL 38.55□□□□□ -1.041e-24■■□□□ 13.3
YBX3P16989 CYBRD1-204ENST00000445146 682 ntTSL 324.19■■□□□ 1.464e-9■■□□□ 13.3
YBX3P16989 CYBRD1-205ENST00000468308 763 ntTSL 320.28■□□□□ 0.844e-9■■□□□ 13.3
YBX3P16989 CYBRD1-206ENST00000474182 465 ntTSL 520.28■□□□□ 0.844e-9■■□□□ 13.3
YBX3P16989 CYBRD1-202ENST00000375252 3540 ntTSL 1 (best) BASIC12.48□□□□□ -0.414e-9■■□□□ 13.3
YBX3P16989 CYBRD1-201ENST00000321348 4365 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.654e-9■■□□□ 13.3
YBX3P16989 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC10.14□□□□□ -0.794e-9■■□□□ 13.3
YBX3P16989 SF3A2-204ENST00000589118 759 ntTSL 221.52■■□□□ 1.041e-9■■□□□ 13.3
YBX3P16989 SF3A2-205ENST00000590034 573 ntTSL 319.41■□□□□ 0.71e-9■■□□□ 13.3
YBX3P16989 RPS24-208ENST00000475468 623 ntTSL 527.12■■□□□ 1.934e-34■■□□□ 13.3
YBX3P16989 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.66■□□□□ 0.94e-34■■□□□ 13.3
YBX3P16989 RPS24-207ENST00000466129 661 ntTSL 210.99□□□□□ -0.654e-34■■□□□ 13.3
YBX3P16989 RPS24-210ENST00000478655 727 ntTSL 1 (best)6.6□□□□□ -1.354e-34■■□□□ 13.3
YBX3P16989 RPS24-205ENST00000464716 452 ntTSL 25.67□□□□□ -1.54e-34■■□□□ 13.3
YBX3P16989 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.631e-7■■□□□ 13.3
YBX3P16989 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.231e-7■■□□□ 13.3
YBX3P16989 WDTC1-205ENST00000491239 5149 ntTSL 213.53□□□□□ -0.241e-7■■□□□ 13.3
YBX3P16989 WDTC1-203ENST00000447062 3115 ntTSL 212.77□□□□□ -0.371e-7■■□□□ 13.3
YBX3P16989 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.871e-9■■□□□ 13.3
YBX3P16989 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.681e-9■■□□□ 13.3
YBX3P16989 ZWILCH-204ENST00000561583 613 ntTSL 412.68□□□□□ -0.385e-6■■□□□ 13.3
YBX3P16989 PES1-211ENST00000477762 513 ntTSL 516.7■□□□□ 0.265e-6■■□□□ 13.3
YBX3P16989 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.73■□□□□ 0.752e-7■■□□□ 13.3
YBX3P16989 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.92■□□□□ 0.462e-7■■□□□ 13.3
YBX3P16989 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.29■□□□□ 0.22e-7■■□□□ 13.3
YBX3P16989 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.252e-7■■□□□ 13.3
YBX3P16989 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC12.04□□□□□ -0.482e-7■■□□□ 13.3
YBX3P16989 HADH-221ENST00000640201 1972 ntTSL 514.13□□□□□ -0.151e-6■■□□□ 13.3
YBX3P16989 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.9■■■□□ 2.71e-9■■□□□ 13.3
YBX3P16989 ZDHHC3-208ENST00000455235 537 ntTSL 431.44■■■□□ 2.621e-9■■□□□ 13.3
YBX3P16989 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.861e-9■■□□□ 13.3
YBX3P16989 ZDHHC3-204ENST00000419642 540 ntTSL 519.76■□□□□ 0.751e-9■■□□□ 13.3
YBX3P16989 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.85□□□□□ -0.031e-9■■□□□ 13.3
YBX3P16989 ZDHHC3-210ENST00000478669 778 ntTSL 514.46□□□□□ -0.091e-9■■□□□ 13.3
YBX3P16989 SERINC3-201ENST00000255175 1726 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.115e-8■■□□□ 13.3
YBX3P16989 SERINC3-202ENST00000342374 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.435e-8■■□□□ 13.3
YBX3P16989 SERINC3-203ENST00000411544 812 ntTSL 311.14□□□□□ -0.635e-8■■□□□ 13.3
YBX3P16989 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.52■□□□□ 0.084e-6■■□□□ 13.3
YBX3P16989 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.64e-6■■□□□ 13.3
YBX3P16989 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.93e-34■■□□□ 13.3
YBX3P16989 RPS24-209ENST00000476545 815 ntTSL 317.49■□□□□ 0.393e-34■■□□□ 13.3
YBX3P16989 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC13.25□□□□□ -0.293e-34■■□□□ 13.3
YBX3P16989 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.533e-34■■□□□ 13.3
YBX3P16989 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.133e-34■■□□□ 13.3
YBX3P16989 RPS24-213ENST00000485708 544 ntTSL 26.29□□□□□ -1.43e-34■■□□□ 13.3
YBX3P16989 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.252e-6■■□□□ 13.3
YBX3P16989 SUCLG2-202ENST00000460567 1596 ntTSL 1 (best)16.2■□□□□ 0.182e-6■■□□□ 13.3
YBX3P16989 SUCLG2-201ENST00000307227 2352 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.172e-6■■□□□ 13.3
YBX3P16989 PCGF5-203ENST00000496708 811 ntTSL 529.08■■■□□ 2.251e-8■■□□□ 13.3
YBX3P16989 PCGF5-202ENST00000490164 973 ntTSL 224.62■■□□□ 1.531e-8■■□□□ 13.3
YBX3P16989 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.311e-8■■□□□ 13.3
YBX3P16989 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.411e-8■■□□□ 13.3
YBX3P16989 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.471e-8■■□□□ 13.3
Retrieved 100 of 29,075 protein–RNA pairs in 1168.1 ms