RNA–Protein interactions for RNA: ENST00000558639.5

PSMA4-208, Transcript of proteasome subunit alpha 4, humanhuman

TSL 3

Gene PSMA4, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-208ENST00000558639 AEBP2Q6ZN18 517 aaPredicted RBP26.18■■□□□ 1.78
PSMA4-208ENST00000558639 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
PSMA4-208ENST00000558639 PHF23Q9BUL5 403 aaPredicted RBP22.95■■□□□ 1.26
PSMA4-208ENST00000558639 SENP3Q9H4L4 574 aaPredicted RBP22.24■■□□□ 1.15
PSMA4-208ENST00000558639 PLPPR3Q6T4P5 718 aa21.47■■□□□ 1.03
PSMA4-208ENST00000558639 FOXD1Q16676 465 aa20.52■□□□□ 0.88
PSMA4-208ENST00000558639 ADRA2BP18089 450 aa20.14■□□□□ 0.81
PSMA4-208ENST00000558639 PPP6R1Q9UPN7 881 aa20.1■□□□□ 0.81
PSMA4-208ENST00000558639 PIAS4Q8N2W9 510 aaPredicted RBP19.53■□□□□ 0.72
PSMA4-208ENST00000558639 KCNA4P22459 653 aa19.04■□□□□ 0.64
PSMA4-208ENST00000558639 PPP4R3CPQ6ZMV5 832 aa18.94■□□□□ 0.62
PSMA4-208ENST00000558639 MSH5O43196 834 aa18.81■□□□□ 0.6
PSMA4-208ENST00000558639 NCBP3Q53F19 620 aaKnown RBP18.67■□□□□ 0.58
PSMA4-208ENST00000558639 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
PSMA4-208ENST00000558639 CNKSR2Q8WXI2 1034 aa18.34■□□□□ 0.53
PSMA4-208ENST00000558639 NPM3O75607 178 aaKnown RBP18.3■□□□□ 0.52
PSMA4-208ENST00000558639 EHMT2Q96KQ7 1210 aa18.3■□□□□ 0.52
PSMA4-208ENST00000558639 SLC4A1APQ9BWU0 796 aaKnown RBP18.27■□□□□ 0.52
PSMA4-208ENST00000558639 NISCHQ9Y2I1 1504 aa18.27■□□□□ 0.51
PSMA4-208ENST00000558639 MAPK8IP2Q13387 824 aaPredicted RBP18.12■□□□□ 0.49
PSMA4-208ENST00000558639 RNF216Q9NWF9 866 aaPredicted RBP17.85■□□□□ 0.45
PSMA4-208ENST00000558639 CSRNP3Q8WYN3 585 aa17.81■□□□□ 0.44
PSMA4-208ENST00000558639 DMRT2Q9Y5R5 561 aa17.8■□□□□ 0.44
PSMA4-208ENST00000558639 POTEDQ86YR6 584 aa17.78■□□□□ 0.44
PSMA4-208ENST00000558639 DNAJC5BQ9UF47 199 aa17.68■□□□□ 0.42
PSMA4-208ENST00000558639 HOXD11P31277 338 aaPredicted RBP17.61■□□□□ 0.41
PSMA4-208ENST00000558639 ZBTB22O15209 634 aa17.47■□□□□ 0.39
PSMA4-208ENST00000558639 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
PSMA4-208ENST00000558639 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
PSMA4-208ENST00000558639 DCAF8L1A6NGE4 600 aa17.08■□□□□ 0.32
PSMA4-208ENST00000558639 MYCNP04198 464 aaPredicted RBP16.95■□□□□ 0.3
PSMA4-208ENST00000558639 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.86■□□□□ 0.29
PSMA4-208ENST00000558639 ATXN8OSP0DMR3 200 aa16.79■□□□□ 0.28
PSMA4-208ENST00000558639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
PSMA4-208ENST00000558639 HNRNPUL2Q1KMD3 747 aaKnown RBP16.64■□□□□ 0.25
PSMA4-208ENST00000558639 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
PSMA4-208ENST00000558639 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
PSMA4-208ENST00000558639 ABCC9O60706 1549 aa16.53■□□□□ 0.24
PSMA4-208ENST00000558639 APLP2Q06481 763 aa16.38■□□□□ 0.21
PSMA4-208ENST00000558639 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
PSMA4-208ENST00000558639 CCDC180Q9P1Z9 1646 aa16.3■□□□□ 0.2
PSMA4-208ENST00000558639 FKBP8Q14318 412 aa16.14■□□□□ 0.17
PSMA4-208ENST00000558639 ZNF219Q9P2Y4 722 aaPredicted RBP16.14■□□□□ 0.17
PSMA4-208ENST00000558639 RNF39Q9H2S5 420 aa16.11■□□□□ 0.17
PSMA4-208ENST00000558639 C1QBPQ07021 282 aaKnown RBP16■□□□□ 0.15
PSMA4-208ENST00000558639 TRHP20396 242 aaPredicted RBP15.98■□□□□ 0.15
PSMA4-208ENST00000558639 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
PSMA4-208ENST00000558639 CAPN15O75808 1086 aa15.94■□□□□ 0.14
PSMA4-208ENST00000558639 POLA2Q14181 598 aa15.81■□□□□ 0.12
PSMA4-208ENST00000558639 FBLN2P98095 1184 aa15.79■□□□□ 0.12
PSMA4-208ENST00000558639 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
PSMA4-208ENST00000558639 MKRN4PQ13434 485 aaPredicted RBP15.69■□□□□ 0.1
PSMA4-208ENST00000558639 SPDYE4A6NLX3 237 aa15.66■□□□□ 0.1
PSMA4-208ENST00000558639 ZBTB12Q9Y330 459 aaPredicted RBP15.65■□□□□ 0.1
PSMA4-208ENST00000558639 ABCB7O75027 752 aa15.64■□□□□ 0.09
PSMA4-208ENST00000558639 RB1CC1Q8TDY2 1594 aa15.62■□□□□ 0.09
PSMA4-208ENST00000558639 AMER1Q5JTC6 1135 aaPredicted RBP15.59■□□□□ 0.09
PSMA4-208ENST00000558639 DSG3P32926 999 aa15.5■□□□□ 0.07
PSMA4-208ENST00000558639 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
PSMA4-208ENST00000558639 RTN4Q9NQC3 1192 aaKnown RBP15.49■□□□□ 0.07
PSMA4-208ENST00000558639 FBXO3Q9UK99 471 aa15.49■□□□□ 0.07
PSMA4-208ENST00000558639 NACADO15069 1562 aa15.49■□□□□ 0.07
PSMA4-208ENST00000558639 CACNB1Q02641 598 aaPredicted RBP15.4■□□□□ 0.06
PSMA4-208ENST00000558639 PROM2Q8N271 834 aa15.39■□□□□ 0.05
PSMA4-208ENST00000558639 ZNF692Q9BU19 519 aaPredicted RBP15.26■□□□□ 0.03
PSMA4-208ENST00000558639 OSCARQ8IYS5 282 aa15.23■□□□□ 0.03
PSMA4-208ENST00000558639 SPDYE2BA6NHP3 402 aa15.22■□□□□ 0.03
PSMA4-208ENST00000558639 SPDYE6P0CI01 402 aa15.22■□□□□ 0.03
PSMA4-208ENST00000558639 SPDYE2Q495Y8 402 aa15.22■□□□□ 0.03
PSMA4-208ENST00000558639 UNC13AQ9UPW8 1703 aa15.22■□□□□ 0.03
PSMA4-208ENST00000558639 VASPP50552 380 aaPredicted RBP15.2■□□□□ 0.02
PSMA4-208ENST00000558639 MYO15BQ96JP2 1530 aa15.18■□□□□ 0.02
PSMA4-208ENST00000558639 BICRAQ9NZM4 1560 aa15.12■□□□□ 0.01
PSMA4-208ENST00000558639 SSUH2Q9Y2M2 353 aa15.11■□□□□ 0.01
PSMA4-208ENST00000558639 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
PSMA4-208ENST00000558639 STAG3Q9UJ98 1225 aa15.03■□□□□ -0
PSMA4-208ENST00000558639 DCAF1Q9Y4B6 1507 aa15□□□□□ -0.01
PSMA4-208ENST00000558639 IFNLR1Q8IU57 520 aaPredicted RBP14.99□□□□□ -0.01
PSMA4-208ENST00000558639 SCRIBQ14160 1630 aa14.97□□□□□ -0.01
PSMA4-208ENST00000558639 KLHL34Q8N239 644 aa14.9□□□□□ -0.02
PSMA4-208ENST00000558639 PLCD3Q8N3E9 789 aa14.88□□□□□ -0.03
PSMA4-208ENST00000558639 CC2D2AQ9P2K1 1620 aa14.86□□□□□ -0.03
PSMA4-208ENST00000558639 CECR2Q9BXF3 1484 aa14.86□□□□□ -0.03
PSMA4-208ENST00000558639 SHROOM4Q9ULL8 1493 aa14.84□□□□□ -0.03
PSMA4-208ENST00000558639 SLC24A1O60721 1099 aa14.84□□□□□ -0.03
PSMA4-208ENST00000558639 RBM42Q9BTD8 480 aaKnown RBP14.84□□□□□ -0.03
PSMA4-208ENST00000558639 MIER1Q8N108 512 aa14.83□□□□□ -0.04
PSMA4-208ENST00000558639 PLEKHG5O94827 1062 aa14.8□□□□□ -0.04
PSMA4-208ENST00000558639 SPOCK2Q92563 424 aa14.8□□□□□ -0.04
PSMA4-208ENST00000558639 EIF4G1Q04637 1599 aaKnown RBP14.79□□□□□ -0.04
PSMA4-208ENST00000558639 AKT1S1Q96B36 256 aa14.73□□□□□ -0.05
PSMA4-208ENST00000558639 ZBTB47Q9UFB7 747 aaPredicted RBP14.71□□□□□ -0.05
PSMA4-208ENST00000558639 SPDYE1Q8NFV5 336 aaPredicted RBP14.68□□□□□ -0.06
PSMA4-208ENST00000558639 PKD2Q13563 968 aa14.67□□□□□ -0.06
PSMA4-208ENST00000558639 CLEC11AQ9Y240 323 aa14.6□□□□□ -0.07
PSMA4-208ENST00000558639 ECM2O94769 699 aaPredicted RBP14.56□□□□□ -0.08
PSMA4-208ENST00000558639 REM2Q8IYK8 340 aaPredicted RBP14.56□□□□□ -0.08
PSMA4-208ENST00000558639 PRR29P0C7W0 189 aa14.54□□□□□ -0.08
PSMA4-208ENST00000558639 CIZ1Q9ULV3 898 aaPredicted RBP14.51□□□□□ -0.09
PSMA4-208ENST00000558639 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms