Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.68■□□□□ 0.42
SEMA3DO95025 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.67■□□□□ 0.42
SEMA3DO95025 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.67■□□□□ 0.42
SEMA3DO95025 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SEMA3DO95025 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SEMA3DO95025 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.67■□□□□ 0.42
SEMA3DO95025 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
SEMA3DO95025 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.67■□□□□ 0.42
SEMA3DO95025 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.67■□□□□ 0.42
SEMA3DO95025 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 CYP2D8P-201ENST00000433633 1490 ntBASIC17.67■□□□□ 0.42
SEMA3DO95025 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.67■□□□□ 0.42
SEMA3DO95025 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.67■□□□□ 0.42
SEMA3DO95025 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SEMA3DO95025 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SEMA3DO95025 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SEMA3DO95025 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.66■□□□□ 0.42
SEMA3DO95025 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SEMA3DO95025 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.66■□□□□ 0.42
SEMA3DO95025 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 KRT8P9-201ENST00000558927 1449 ntBASIC17.66■□□□□ 0.42
SEMA3DO95025 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.66■□□□□ 0.42
SEMA3DO95025 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.66■□□□□ 0.42
SEMA3DO95025 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.66■□□□□ 0.42
SEMA3DO95025 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.66■□□□□ 0.42
SEMA3DO95025 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.66■□□□□ 0.42
SEMA3DO95025 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SEMA3DO95025 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.66■□□□□ 0.42
SEMA3DO95025 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SEMA3DO95025 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SEMA3DO95025 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.65■□□□□ 0.42
SEMA3DO95025 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.65■□□□□ 0.42
SEMA3DO95025 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.65■□□□□ 0.42
SEMA3DO95025 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.65■□□□□ 0.42
SEMA3DO95025 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.65■□□□□ 0.42
SEMA3DO95025 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.65■□□□□ 0.42
SEMA3DO95025 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SEMA3DO95025 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.65■□□□□ 0.42
SEMA3DO95025 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.65■□□□□ 0.42
SEMA3DO95025 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 AL512604.3-201ENST00000569583 964 ntBASIC17.65■□□□□ 0.42
SEMA3DO95025 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SEMA3DO95025 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.65■□□□□ 0.42
SEMA3DO95025 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.65■□□□□ 0.42
SEMA3DO95025 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SEMA3DO95025 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.65■□□□□ 0.42
SEMA3DO95025 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SEMA3DO95025 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
SEMA3DO95025 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SEMA3DO95025 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SEMA3DO95025 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms