Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HMGB3O15347 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HMGB3O15347 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGB3O15347 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.86□□□□□ -0.03
HMGB3O15347 RALB-208ENST00000631312 311 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGB3O15347 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HMGB3O15347 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HMGB3O15347 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGB3O15347 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
HMGB3O15347 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGB3O15347 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGB3O15347 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGB3O15347 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGB3O15347 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGB3O15347 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGB3O15347 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
HMGB3O15347 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGB3O15347 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 PRORSD1P-202ENST00000563365 2154 ntBASIC14.84□□□□□ -0.03
HMGB3O15347 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC14.84□□□□□ -0.03
HMGB3O15347 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC14.84□□□□□ -0.03
HMGB3O15347 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGB3O15347 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC14.84□□□□□ -0.03
HMGB3O15347 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms