Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 STARP1-201ENST00000397973 869 ntBASIC18.57■□□□□ 0.56
TRIM38O00635 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.57■□□□□ 0.56
TRIM38O00635 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.57■□□□□ 0.56
TRIM38O00635 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.57■□□□□ 0.56
TRIM38O00635 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM38O00635 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.57■□□□□ 0.56
TRIM38O00635 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
TRIM38O00635 AL031598.1-201ENST00000561511 1773 ntBASIC18.57■□□□□ 0.56
TRIM38O00635 AC018470.1-201ENST00000624790 3129 ntBASIC18.57■□□□□ 0.56
TRIM38O00635 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM38O00635 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM38O00635 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM38O00635 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM38O00635 TEX21P-204ENST00000641479 1693 ntBASIC18.57■□□□□ 0.56
TRIM38O00635 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM38O00635 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM38O00635 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM38O00635 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM38O00635 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 HCG4P8-203ENST00000443049 980 ntBASIC18.56■□□□□ 0.56
TRIM38O00635 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM38O00635 ZNF444P1-201ENST00000559497 298 ntBASIC18.56■□□□□ 0.56
TRIM38O00635 AC069148.1-201ENST00000608741 768 ntBASIC18.56■□□□□ 0.56
TRIM38O00635 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM38O00635 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM38O00635 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRIM38O00635 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM38O00635 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM38O00635 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TRIM38O00635 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM38O00635 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM38O00635 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
TRIM38O00635 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM38O00635 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM38O00635 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM38O00635 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 AC104417.2-201ENST00000562989 1793 ntBASIC18.55■□□□□ 0.56
TRIM38O00635 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM38O00635 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM38O00635 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM38O00635 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 SPDYE15P-201ENST00000424157 909 ntBASIC18.54■□□□□ 0.56
TRIM38O00635 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM38O00635 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 LINC01311-201ENST00000565162 1445 ntBASIC18.54■□□□□ 0.56
TRIM38O00635 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 AC093525.10-201ENST00000625130 1569 ntBASIC18.54■□□□□ 0.56
TRIM38O00635 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM38O00635 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TRIM38O00635 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM38O00635 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms