Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 AC126763.1-201ENST00000552015 2118 ntBASIC19.29■□□□□ 0.68
USP3Q9Y6I4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.29■□□□□ 0.68
USP3Q9Y6I4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AL162741.1-201ENST00000565563 1558 ntBASIC19.28■□□□□ 0.68
USP3Q9Y6I4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AL645929.1-201ENST00000420084 975 ntBASIC19.28■□□□□ 0.68
USP3Q9Y6I4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 IER3-202ENST00000376377 1350 ntBASIC19.28■□□□□ 0.68
USP3Q9Y6I4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP3Q9Y6I4 AC073592.3-201ENST00000625118 1834 ntBASIC19.28■□□□□ 0.68
USP3Q9Y6I4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP3Q9Y6I4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP3Q9Y6I4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.26■□□□□ 0.67
USP3Q9Y6I4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms