Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK1Q99986 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK1Q99986 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK1Q99986 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 KRT8P41-201ENST00000533985 1514 ntBASIC16.31■□□□□ 0.2
VRK1Q99986 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK1Q99986 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK1Q99986 KRT18P35-201ENST00000510488 1269 ntBASIC16.31■□□□□ 0.2
VRK1Q99986 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK1Q99986 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK1Q99986 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK1Q99986 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VRK1Q99986 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK1Q99986 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK1Q99986 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK1Q99986 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK1Q99986 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 AC073508.3-201ENST00000619697 1419 ntBASIC16.3■□□□□ 0.2
VRK1Q99986 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.3■□□□□ 0.2
VRK1Q99986 TSPY17P-201ENST00000450329 467 ntBASIC16.3■□□□□ 0.2
VRK1Q99986 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 FAM87A-204ENST00000613235 858 ntBASIC16.3■□□□□ 0.2
VRK1Q99986 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.3■□□□□ 0.2
VRK1Q99986 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 NOC2LP1-202ENST00000452600 2235 ntBASIC16.3■□□□□ 0.2
VRK1Q99986 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK1Q99986 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VRK1Q99986 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK1Q99986 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.29■□□□□ 0.2
VRK1Q99986 NOC2LP2-201ENST00000407594 1944 ntBASIC16.29■□□□□ 0.2
VRK1Q99986 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VRK1Q99986 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VRK1Q99986 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VRK1Q99986 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VRK1Q99986 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms