Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AL390719.1-204ENST00000412397 1219 ntBASIC13.97□□□□□ -0.17
AP1S3Q96PC3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AC231657.2-201ENST00000624556 255 ntBASIC13.97□□□□□ -0.17
AP1S3Q96PC3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AC009053.2-201ENST00000563701 2365 ntBASIC13.97□□□□□ -0.17
AP1S3Q96PC3 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 AC068880.1-201ENST00000507289 2297 ntBASIC13.97□□□□□ -0.17
AP1S3Q96PC3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
AP1S3Q96PC3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 LSM12P1-201ENST00000411836 588 ntBASIC13.96□□□□□ -0.17
AP1S3Q96PC3 ZNRF2P3-201ENST00000424200 374 ntBASIC13.96□□□□□ -0.17
AP1S3Q96PC3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
AP1S3Q96PC3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 FP475955.4-201ENST00000623131 1990 ntBASIC13.96□□□□□ -0.18
AP1S3Q96PC3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
AP1S3Q96PC3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 AC007322.1-201ENST00000426983 750 ntBASIC13.95□□□□□ -0.18
AP1S3Q96PC3 GXYLT1P2-201ENST00000433312 1230 ntBASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
AP1S3Q96PC3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms