Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.69■□□□□ 0.42
VMP1Q96GC9 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.69■□□□□ 0.42
VMP1Q96GC9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VMP1Q96GC9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.68■□□□□ 0.42
VMP1Q96GC9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 ECEL1P2-202ENST00000465689 757 ntBASIC17.68■□□□□ 0.42
VMP1Q96GC9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 AL023803.3-201ENST00000615559 522 ntBASIC17.68■□□□□ 0.42
VMP1Q96GC9 AC010653.2-201ENST00000623505 997 ntBASIC17.68■□□□□ 0.42
VMP1Q96GC9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VMP1Q96GC9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.68■□□□□ 0.42
VMP1Q96GC9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 AC113347.1-201ENST00000413321 391 ntBASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLC25A3P1-201ENST00000443844 931 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms