Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 KRT18P56-201ENST00000507275 550 ntBASIC17.15■□□□□ 0.34
BEST3Q8N1M1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 AC079602.3-201ENST00000623931 403 ntBASIC17.15■□□□□ 0.34
BEST3Q8N1M1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
BEST3Q8N1M1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 KRT8P7-201ENST00000533003 1432 ntBASIC17.14■□□□□ 0.33
BEST3Q8N1M1 HOXB1-202ENST00000577092 1414 ntBASIC17.14■□□□□ 0.33
BEST3Q8N1M1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BEST3Q8N1M1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 HCG4P8-203ENST00000443049 980 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC104390.1-201ENST00000555663 520 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC010240.3-201ENST00000607688 395 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC068587.9-201ENST00000641814 219 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC034236.2-201ENST00000606662 1610 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AC005332.7-201ENST00000614046 2005 ntBASIC17.13■□□□□ 0.33
BEST3Q8N1M1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.13■□□□□ 0.33
BEST3Q8N1M1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms