Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPP55072 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VCPP55072 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPP55072 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VCPP55072 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.77■□□□□ 0.76
VCPP55072 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VCPP55072 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.77■□□□□ 0.76
VCPP55072 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 AL031008.1-201ENST00000619963 541 ntBASIC19.77■□□□□ 0.76
VCPP55072 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VCPP55072 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VCPP55072 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VCPP55072 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
VCPP55072 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.76■□□□□ 0.75
VCPP55072 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
VCPP55072 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.76■□□□□ 0.75
VCPP55072 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.76■□□□□ 0.75
VCPP55072 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.76■□□□□ 0.75
VCPP55072 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.76■□□□□ 0.75
VCPP55072 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VCPP55072 IFNL4P1-201ENST00000607083 540 ntBASIC19.76■□□□□ 0.75
VCPP55072 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.76■□□□□ 0.75
VCPP55072 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.76■□□□□ 0.75
VCPP55072 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.76■□□□□ 0.75
VCPP55072 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VCPP55072 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPP55072 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VCPP55072 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.75■□□□□ 0.75
VCPP55072 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.75■□□□□ 0.75
VCPP55072 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.75■□□□□ 0.75
VCPP55072 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.75■□□□□ 0.75
VCPP55072 STARP1-201ENST00000397973 869 ntBASIC19.75■□□□□ 0.75
VCPP55072 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.75■□□□□ 0.75
VCPP55072 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.75■□□□□ 0.75
VCPP55072 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.75■□□□□ 0.75
VCPP55072 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.75■□□□□ 0.75
VCPP55072 EMBP1-201ENST00000458200 901 ntBASIC19.75■□□□□ 0.75
VCPP55072 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VCPP55072 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.75■□□□□ 0.75
VCPP55072 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VCPP55072 Z98044.1-201ENST00000632503 1764 ntBASIC19.75■□□□□ 0.75
VCPP55072 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
VCPP55072 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.74■□□□□ 0.75
VCPP55072 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.74■□□□□ 0.75
VCPP55072 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.74■□□□□ 0.75
VCPP55072 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.74■□□□□ 0.75
VCPP55072 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.74■□□□□ 0.75
VCPP55072 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.74■□□□□ 0.75
VCPP55072 SPDYE15P-201ENST00000424157 909 ntBASIC19.74■□□□□ 0.75
VCPP55072 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 AP003041.3-201ENST00000527151 707 ntBASIC19.74■□□□□ 0.75
VCPP55072 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.74■□□□□ 0.75
VCPP55072 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
VCPP55072 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VCPP55072 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VCPP55072 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VCPP55072 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VCPP55072 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms