Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CXCL1P09341 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.36□□□□□ -0.11
CXCL1P09341 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.36□□□□□ -0.11
CXCL1P09341 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.36□□□□□ -0.11
CXCL1P09341 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CXCL1P09341 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.36□□□□□ -0.11
CXCL1P09341 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 AC105020.1-201ENST00000435356 2205 ntBASIC14.35□□□□□ -0.11
CXCL1P09341 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 GCK-205ENST00000437084 1385 ntTSL 5 BASIC14.35□□□□□ -0.11
CXCL1P09341 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
CXCL1P09341 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 KRT18P68-201ENST00000392293 1000 ntBASIC14.35□□□□□ -0.11
CXCL1P09341 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.35□□□□□ -0.11
CXCL1P09341 UQCRFS1P1-201ENST00000435169 820 ntBASIC14.35□□□□□ -0.11
CXCL1P09341 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.35□□□□□ -0.11
CXCL1P09341 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC14.35□□□□□ -0.11
CXCL1P09341 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC14.35□□□□□ -0.11
CXCL1P09341 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 HYMAI-201ENST00000635591 3347 ntBASIC14.35□□□□□ -0.11
CXCL1P09341 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.35□□□□□ -0.11
CXCL1P09341 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.35□□□□□ -0.11
CXCL1P09341 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CXCL1P09341 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
CXCL1P09341 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL1P09341 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 CROCCP2-202ENST00000412962 2773 ntBASIC14.34□□□□□ -0.11
CXCL1P09341 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL1P09341 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL1P09341 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.34□□□□□ -0.11
CXCL1P09341 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL1P09341 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 KRT18P11-201ENST00000435214 1283 ntBASIC14.34□□□□□ -0.11
CXCL1P09341 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CXCL1P09341 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL1P09341 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
CXCL1P09341 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL1P09341 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms