Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.51■■□□□ 1.03
PRPF40AO75400 AC112777.1-201ENST00000540175 1423 ntBASIC21.51■■□□□ 1.03
PRPF40AO75400 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.51■■□□□ 1.03
PRPF40AO75400 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.51■■□□□ 1.03
PRPF40AO75400 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.5■■□□□ 1.03
PRPF40AO75400 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 KRT17P3-201ENST00000420566 1262 ntBASIC21.5■■□□□ 1.03
PRPF40AO75400 AC128676.1-201ENST00000454392 318 ntBASIC21.5■■□□□ 1.03
PRPF40AO75400 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.5■■□□□ 1.03
PRPF40AO75400 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.5■■□□□ 1.03
PRPF40AO75400 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.5■■□□□ 1.03
PRPF40AO75400 MYC-208ENST00000641036 567 ntBASIC21.5■■□□□ 1.03
PRPF40AO75400 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.5■■□□□ 1.03
PRPF40AO75400 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF40AO75400 AC008556.1-201ENST00000610908 2040 ntBASIC21.5■■□□□ 1.03
PRPF40AO75400 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
PRPF40AO75400 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.49■■□□□ 1.03
PRPF40AO75400 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.49■■□□□ 1.03
PRPF40AO75400 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.49■■□□□ 1.03
PRPF40AO75400 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.49■■□□□ 1.03
PRPF40AO75400 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PRPF40AO75400 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.49■■□□□ 1.03
PRPF40AO75400 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF40AO75400 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.48■■□□□ 1.03
PRPF40AO75400 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
PRPF40AO75400 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.48■■□□□ 1.03
PRPF40AO75400 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
PRPF40AO75400 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.48■■□□□ 1.03
PRPF40AO75400 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.48■■□□□ 1.03
PRPF40AO75400 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PRPF40AO75400 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
PRPF40AO75400 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 AC080080.1-201ENST00000625121 2420 ntBASIC21.48■■□□□ 1.03
PRPF40AO75400 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF40AO75400 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF40AO75400 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 KRT8P45-201ENST00000414328 1447 ntBASIC21.47■■□□□ 1.03
PRPF40AO75400 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 BCL2-203ENST00000589955 5011 ntBASIC21.47■■□□□ 1.03
PRPF40AO75400 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms