Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS4BO75351 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 MTMR9LP-203ENST00000426597 1545 ntBASIC18.14■□□□□ 0.49
VPS4BO75351 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS4BO75351 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS4BO75351 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS4BO75351 ATP5G1P1-201ENST00000448724 379 ntBASIC18.14■□□□□ 0.49
VPS4BO75351 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS4BO75351 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.14■□□□□ 0.49
VPS4BO75351 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS4BO75351 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VPS4BO75351 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 KRT8P32-201ENST00000512863 1461 ntBASIC18.14■□□□□ 0.49
VPS4BO75351 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS4BO75351 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS4BO75351 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS4BO75351 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS4BO75351 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS4BO75351 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS4BO75351 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS4BO75351 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
VPS4BO75351 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS4BO75351 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS4BO75351 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS4BO75351 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS4BO75351 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 Z85996.1-201ENST00000494644 937 ntBASIC18.12■□□□□ 0.49
VPS4BO75351 PRSS44-201ENST00000515154 1146 ntBASIC18.12■□□□□ 0.49
VPS4BO75351 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS4BO75351 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS4BO75351 KRT8P3-201ENST00000519669 1449 ntBASIC18.12■□□□□ 0.49
VPS4BO75351 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
VPS4BO75351 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS4BO75351 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS4BO75351 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS4BO75351 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS4BO75351 AC068880.1-201ENST00000507289 2297 ntBASIC18.11■□□□□ 0.49
VPS4BO75351 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 AL133373.2-201ENST00000623187 2828 ntBASIC18.11■□□□□ 0.49
VPS4BO75351 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms