Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.54■□□□□ 0.4
PROM1O43490 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.54■□□□□ 0.4
PROM1O43490 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.54■□□□□ 0.4
PROM1O43490 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 KRT8P50-201ENST00000562022 1438 ntBASIC17.54■□□□□ 0.4
PROM1O43490 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 AC009113.1-201ENST00000570267 2443 ntBASIC17.53■□□□□ 0.4
PROM1O43490 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.53■□□□□ 0.4
PROM1O43490 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.53■□□□□ 0.4
PROM1O43490 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.53■□□□□ 0.4
PROM1O43490 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PROM1O43490 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PROM1O43490 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.52■□□□□ 0.4
PROM1O43490 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.52■□□□□ 0.4
PROM1O43490 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.52■□□□□ 0.4
PROM1O43490 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PROM1O43490 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 RCN1P1-201ENST00000400413 996 ntBASIC17.52■□□□□ 0.4
PROM1O43490 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 KRT18P23-201ENST00000435622 1283 ntBASIC17.52■□□□□ 0.4
PROM1O43490 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.52■□□□□ 0.4
PROM1O43490 SLC25A3P1-201ENST00000443844 931 ntBASIC17.52■□□□□ 0.4
PROM1O43490 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.52■□□□□ 0.4
PROM1O43490 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.52■□□□□ 0.4
PROM1O43490 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
PROM1O43490 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PROM1O43490 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PROM1O43490 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.52■□□□□ 0.4
PROM1O43490 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PROM1O43490 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms