Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.89□□□□□ -0.03
HMGB3O15347 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 CYP2T3P-201ENST00000601990 817 ntBASIC14.89□□□□□ -0.03
HMGB3O15347 SP2-202ENST00000613139 908 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGB3O15347 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGB3O15347 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGB3O15347 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 FEM1AP3-201ENST00000403722 1741 ntBASIC14.89□□□□□ -0.03
HMGB3O15347 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGB3O15347 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.88□□□□□ -0.03
HMGB3O15347 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 PCDHA12-202ENST00000613593 2588 ntBASIC14.88□□□□□ -0.03
HMGB3O15347 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
HMGB3O15347 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.88□□□□□ -0.03
HMGB3O15347 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB3O15347 AC007322.4-201ENST00000509611 723 ntBASIC14.88□□□□□ -0.03
HMGB3O15347 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 LINC00896-202ENST00000609602 2128 ntBASIC14.88□□□□□ -0.03
HMGB3O15347 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 RAB43-208ENST00000615093 783 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
HMGB3O15347 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB3O15347 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB3O15347 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGB3O15347 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
HMGB3O15347 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB3O15347 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC14.87□□□□□ -0.03
HMGB3O15347 AC083906.6-201ENST00000641366 219 ntBASIC14.87□□□□□ -0.03
HMGB3O15347 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB3O15347 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB3O15347 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB3O15347 AC073592.3-201ENST00000625118 1834 ntBASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms