Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 AC092119.3-201ENST00000612618 583 ntBASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 AL512353.2-201ENST00000448759 1962 ntBASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PDZRN3Q9UPQ7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 KRT17P6-201ENST00000453795 1220 ntBASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC23.84■■□□□ 1.41
PDZRN3Q9UPQ7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 AC246785.2-201ENST00000432512 513 ntBASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 WIZP1-201ENST00000531444 2299 ntBASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.83■■□□□ 1.41
PDZRN3Q9UPQ7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.83■■□□□ 1.4
PDZRN3Q9UPQ7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.4
PDZRN3Q9UPQ7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PDZRN3Q9UPQ7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 RASA4DP-201ENST00000460726 1199 ntBASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 AL121672.3-201ENST00000608644 468 ntBASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
PDZRN3Q9UPQ7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 TSSC2-201ENST00000450217 709 ntBASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PDZRN3Q9UPQ7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PDZRN3Q9UPQ7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms