Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 PRAL-201ENST00000624952 3286 ntBASIC9.5□□□□□ -0.89
CDC42SE1Q9NRR8 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 AC116050.2-201ENST00000612102 1779 ntBASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CDC42SE1Q9NRR8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 AC092384.3-202ENST00000564646 2873 ntBASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 AC092171.3-201ENST00000610122 2651 ntBASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC9.48□□□□□ -0.89
CDC42SE1Q9NRR8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC9.48□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms