Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 NTF6B-201ENST00000591913 560 ntBASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 TNXA-203ENST00000507684 2038 ntBASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM39Q9HCM9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 AC004408.2-201ENST00000623613 2777 ntBASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 AP000593.1-201ENST00000393668 712 ntBASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 KRT18P35-201ENST00000510488 1269 ntBASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 AC093525.10-201ENST00000625130 1569 ntBASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM39Q9HCM9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM39Q9HCM9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 AL359075.1-203ENST00000462729 1002 ntBASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MIR3917-201ENST00000580971 93 ntBASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MIR3180-4-201ENST00000582223 153 ntBASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 AL445228.2-201ENST00000605589 952 ntBASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM39Q9HCM9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms