Protein–RNA interactions for Protein: Q9BRK5

SDF4, 45 kDa calcium-binding protein, humanhuman

Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4Q9BRK5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SDF4Q9BRK5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SDF4Q9BRK5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 AC010331.1-201ENST00000611423 582 ntBASIC21.51■■□□□ 1.03
SDF4Q9BRK5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDF4Q9BRK5 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 AC026471.1-201ENST00000564629 3026 ntBASIC21.5■■□□□ 1.03
SDF4Q9BRK5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.5■■□□□ 1.03
SDF4Q9BRK5 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 ANO7L1-203ENST00000602586 1720 ntBASIC21.49■■□□□ 1.03
SDF4Q9BRK5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 AC083906.6-201ENST00000641366 219 ntBASIC21.49■■□□□ 1.03
SDF4Q9BRK5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
SDF4Q9BRK5 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.48■■□□□ 1.03
SDF4Q9BRK5 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.48■■□□□ 1.03
SDF4Q9BRK5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDF4Q9BRK5 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms